Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Data-Driven Soft Labeling Scales DNA Read Classification to Whole-Body Cell-Type Deconvolution
- Computational Typology
- Curriculum-Augmented GFlowNets For mRNA Sequence Generation
- Alignment of visual brain encoding models with individual perceptual similarity judgments
- One-shot learning of paired association navigation with biologically plausible schemas
- Generic finiteness of solutions to parametrized systems of generalized polynomial inequalities
- PACE: Geometry-Aware Bridge Transport for Single-Cell Trajectory Inference
- What I Disbelieve: Quantifying Belief With Negative Ranking Functions
- An Open Reliability Atlas of Sensitivity and Failure Modes in the Pulse Physiology Engine
- EMBER: Predicting TCR--pMHC Binding Without a Docked Complex
- Simulation-free approximate Bayesian computation for stochastic reaction networks
- Virtual lineages: in silico lineage tracing from single-cell and spatial transcriptomes
- Genetic Perturbation Prediction Models Fail Out-of-Distribution: A Rigorous Benchmark and Systematic Evaluation
- Genome-scale metabolic models for a synthetic soil microbial community as a path for understanding community functioning
- Scalable proteomics with multiDIA resolves proteoforms in neurodegenerative disease
- Survival-associated cellular communication networks in human solid cancers
- Gut microbially produced phenolic acids have differential and sex-dependent effects on host metabolic health
- Computational modeling of VEGF-A signaling predicts lymphatic junction state
- SHAPPEing agent-based models to spatial data: Sequential Hooke's law Algorithm for Point Pattern reconstruction with Environmental constraints
- Drug-centric knowledge graph: representing therapeutic modality, pharmacology and multiscale biology
- Variation in psychiatric diagnoses and use of psychotropic medication among children, adolescents, and young adults in Denmark
- Quantifying Fine-scale Vegetation Associated with Ixodes scapularis Density to Inform Public Health Programming, Western Massachusetts
- Development and Validation of a Parsimonious Financial Well-Being Index in the Health and Retirement Study
- Long Sleep and Insomnia are Associated with Reduced Global Cognitive Function across Diverse Populations
- Pharmacovigilance and Mechanistic Analysis of Adverse Reaction Differences Across EGFR Tyrosine Kinase Inhibitor Generations in Non-Small Cell Lung Cancer
- Prediagnosis Smoking and Survival in Lung, Bladder, Kidney, and Head and Neck Cancers: A Population-Based Data Linkage Study
- Sex-, age-, and BMI-specific patterns of visual and numerical body-size ideals in Japan: a large cross-sectional web-based survey
- Reconstructing Dengue Exposure Dynamics and Assessing the Public Health Impact of Vaccination Scenarios Using Mathematical Models in Brazil
- Mapping county-level tick-borne disease risk in Illinois by integrating vector abundance, pathogen prevalence, and phenology
- Epidemiologic shifts predict spatial patterns of measles re-emergence in the United States
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- Mapping the combinatorial coding between olfactory receptors and perception with deep learning
- Multiobjective learning and design of bacteriophage specificity
- Synthetic tissue ecology: Ecological control of developmental self-organization across scales
- A diversified consortium of engineered biosensors enables multi-target quantification
- Interpretable biophysical neural networks of transcriptional activation domains separate roles of protein abundance and coactivator binding
- Learning dissipative chaotic dynamics with boundedness guarantees
- Taylor’s law beyond finite moments: A route to dynamic financial risk
- Generalized Taylor’s law for infinite-mean heavy-tailed data under dependence and heterogeneity
- Mathematical discovery and exploration can be done at scale
- Mantis: A foundation model for mechanistic disease forecasting
- Optimal scheduling of dengue vector control
- Stationary analysis of adaptive aspiration dynamics in graph-structured games
- Cultivation interruptions reduce fitness without consistently increasing phenotypic plasticity in an evolutionary reaction-norm model
- Life finds a way: Emergence of cooperative structures in adaptive threshold networks
- Dispersal asymmetry and dispersal distance shape dynamics and extinction risk in predator–prey metacommunities
- Coherent dynamical analysis arising from a stage-structured predator-prey model in a chemostat
- Parkinson’s disease, Gaucher disease, and bistability in the lysosomal degradation pathway
- Reaction-diffusion models of invasive tree pest spread: Quantifying the expansion of oak processionary moth in the UK
- Dynamics analysis of a delayed reaction-diffusion Filippov pest management model with double economic thresholds
- Linking osmotic laxative exposure to effective gut microbial dynamics: A treatment-dependent Lotka-Volterra analysis
- Weak dispersal and landscape size inevitably promote local biodiversity in heterogeneous metacommunities of competing species
- Ten simple rules for developing a reporting appraisal tool
- Computational deconvolution of drug sensitivity via single-cell–to–bulk transcriptome mapping
- Computation-through-Dynamics Toolkit: Simulated datasets and quality metrics for dynamical models of neural activity
- Leveraging spatial structure to design spatially-targeted malaria interventions at the community-scale
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- Next-generation metabolic models: From multi-constraint integration to AI-driven whole-cell kinetic simulation
- Unleashing the potential of whole-cell modelling one step at a time
- The evolution of standards in systems biology: From metabolic and multi-scale to whole-cell models
- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
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