Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Sampling at intermediate temperatures is optimal for training large language models in protein structure prediction
- Tracking and distinguishing slime mold solutions to traveling salesperson problems through synchronized amplification in the non-equilibrium steady state
- Information geometry of perturbed gradient flow systems on hypergraphs: A perspective towards nonequilibrium physics
- Machine Learning of Temperature-dependent Chemical Kinetics Using Parallel Droplet Microreactors
- Resultant Tools for Parametric Polynomial Systems with Application to Mathematical Biology
- Reactive molecular dynamics simulations of atenolol first steps degradation by 9CL6 ammonia monooxygenase
- A conceptual predator-prey model with super-long transients
- Mutation Order and Selection Shape Intratumor Heterogeneity in Tumor Evolution
- Simulation and Analysis of Solute Transport in Multi-Lymphangion Lymphatic Vessels
- A theory of plasticity: capacity for change as inverse configurational constraint
- Transcription factors read a second regulatory code in chromatin
- Speciesformer learns conserved cellular states for cross-species generative virtual cell modeling
- Estimation of the transmission dynamics of H5N1 HPAI outbreak in a dairy herd using a modeling approach
- An AI-ready compositional framework for mechanistic aging research and in silico intervention testing
- Mouse lymph node colonization models predict human tumor metastasis in melanoma
- Deciphering the dynamical origin of the Adipogenic commitment during stress-induced disruption of the circadian rhythm
- mc-ASTRA maps population-level variation to interpretable multicellular tissue organization processes
- The Urogenital Lactobacillus Axis Across Menopause: Connections Between the Vagina, Bladder, and Urinary Metabolome
- Single residues within the YTHDF intrinsically disordered region control m6A-dependent mRNA decay
- A Temporal Interactome Atlas across RNA Viruses reveals Convergent Vulnerabilities for Antiviral Repurposing
- Wastewater metagenomic sequencing enables broad pathogen and resistome monitoring in Lagos, Nigeria
- Social Isolation and All-Cause and Cause-Specific Mortality in the UK Biobank: The Modifying Role of Non-Commute Transportation Mode
- Distinct Somatic Mutational Landscapes in Paired Blood and Arterial Tissues in Coronary Artery Disease
- Within-Year PM2.5 Exposure Structure Provides Mortality-Predictive Information Beyond the Annual Mean
- Impact of climate and acquired immunity on malaria burden in Senegal and The Gambia: an agent-based modeling study
- Finding Safety Signals in Sparse Data: Zero-Inflated Models for Pharmacovigilance studies
- Associations Between Measures of Sleep Health and Cognitive Function in Older Adults
- Repeated SARS-CoV-2 Introductions with Limited Local Establishment in Bangladesh, 2020-2025
- Distinct Type 2 Diabetes Components Exert Contrasting Effects on Abdominal Aortic Aneurysm Development
- Protective effect of influenza vaccine in Brazilian patients hospitalised for severe acute respiratory infection, 2023-2025
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- Mapping the combinatorial coding between olfactory receptors and perception with deep learning
- Multiobjective learning and design of bacteriophage specificity
- Synthetic tissue ecology: Ecological control of developmental self-organization across scales
- A diversified consortium of engineered biosensors enables multi-target quantification
- Interpretable biophysical neural networks of transcriptional activation domains separate roles of protein abundance and coactivator binding
- Messaging strategies and the emergence of echo chambers in collective decision-making
- Correction for Zhang et al., Reconstructing the early spatial spread of pandemic respiratory viruses in the United States
- Uncovering dynamic human brain phase coherence networks
- Stochasticity and probabilistic trajectory scoring are essential for data-driven closures of chaotic systems
- Group size effects and collective misalignment in LLM multi-agent systems
- Self-organized pattern formation of a common tropical alga
- Spatiotemporal patterns in predator-prey system with free space and limited resources
- Eco-evolutionary modelling, fitness and Lotka’s mass conjectures
- Modeling hepatitis D virus kinetics during bulevirtide monotherapy: challenges and solutions
- Endogenizing social norms in epidemic dynamics: A behavior-infection-norm framework
- Transition-pair structure and near-extremal third-position transition robustness in the standard genetic code
- Data requirements for accurate extinction-risk prediction in bistable populations
- Cross-channel and local feedback inhibition shape selectivity–flexibility regimes in a reduced thalamoreticular rate model
- Use of topological data analysis for the detection of phenomenological bifurcations in stochastic epidemiological models
- Stochastic analysis of temporal tumor evolution with macrophage effects
- Comparing subsampling strategies for efficient pairwise analysis of large pathogen genomic and spatial datasets: An application to Mycobacterium tuberculosis transmission
- Coupling with opinion dynamics promotes prosocial behavior in multilayer networks
- Deterministic dynamics of distributional multi-agent reinforcement learning
- Shared pathogenic genes and therapeutic targets in periodontitis and systemic juvenile idiopathic arthritis: An integrative bioinformatics and machine learning study
- A spectral framework for measuring diversity in multiple sequence alignments
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- Unleashing the potential of whole-cell modelling one step at a time
- The evolution of standards in systems biology: From metabolic and multi-scale to whole-cell models
- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- Amniote gastrulation in silico
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