Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
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- Concentration limits and localization of hydrogen peroxide in the extracellular space of solid tissues
- PyKappa: Rule-based modeling in Python
- LSD-pipeline: Causal Inference of miRNA Network Effects in Alzheimer's Disease
- Age-Related Remodeling of Cross-Tissue Transcriptional Coordination in the Human Motor System
- Chaperone isoform and interactome mapping reveals functional diversification of DNAJA2-DNAJA4 complexes via stress-regulated isoforms
- An AI-ready compositional framework for mechanistic aging research and in silico intervention testing
- Transcription factors read a second regulatory code in chromatin
- Mouse lymph node colonization models predict human tumor metastasis in melanoma
- Speciesformer learns conserved cellular states for cross-species generative virtual cell modeling
- Estimation of the transmission dynamics of H5N1 HPAI outbreak in a dairy herd using a modeling approach
- Wastewater metagenomic sequencing enables broad pathogen and resistome monitoring in Lagos, Nigeria
- Social Isolation and All-Cause and Cause-Specific Mortality in the UK Biobank: The Modifying Role of Non-Commute Transportation Mode
- Distinct Somatic Mutational Landscapes in Paired Blood and Arterial Tissues in Coronary Artery Disease
- Within-Year PM2.5 Exposure Structure Provides Mortality-Predictive Information Beyond the Annual Mean
- Impact of climate and acquired immunity on malaria burden in Senegal and The Gambia: an agent-based modeling study
- Finding Safety Signals in Sparse Data: Zero-Inflated Models for Pharmacovigilance studies
- Associations Between Measures of Sleep Health and Cognitive Function in Older Adults
- Repeated SARS-CoV-2 Introductions with Limited Local Establishment in Bangladesh, 2020-2025
- Distinct Type 2 Diabetes Components Exert Contrasting Effects on Abdominal Aortic Aneurysm Development
- Protective effect of influenza vaccine in Brazilian patients hospitalised for severe acute respiratory infection, 2023-2025
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- Network topology creates independent control of multiple checkpoints in the cell cycle system
- Messaging strategies and the emergence of echo chambers in collective decision-making
- Correction for Zhang et al., Reconstructing the early spatial spread of pandemic respiratory viruses in the United States
- Uncovering dynamic human brain phase coherence networks
- Stochasticity and probabilistic trajectory scoring are essential for data-driven closures of chaotic systems
- Pillars of theoretical biology: Superspreading and the effect of individual variation on disease emergence
- Brain cancer in silico modelling - the roadmap ahead
- Self-organized pattern formation of a common tropical alga
- Spatiotemporal patterns in predator-prey system with free space and limited resources
- Eco-evolutionary modelling, fitness and Lotka’s mass conjectures
- Scalable branch-and-bound model selection with non-monotonic criteria including AIC, BIC and Mallows’s Cp
- Optimal control of dengue under vaccine heterogeneity: From dynamical analysis to dynamic strategy optimization
- Transition-pair structure and near-extremal third-position transition robustness in the standard genetic code
- Data requirements for accurate extinction-risk prediction in bistable populations
- Cross-channel and local feedback inhibition shape selectivity–flexibility regimes in a reduced thalamoreticular rate model
- Integrating zero-inflation correction and transcriptional kinetics for single-cell transcriptomic analysis
- Fast structural search for classification of gut bacterial mucin O-glycan degrading enzymes
- Decomposing response inhibition: A POMDP model
- Topologically-based parameter inference for agent-based model selection from spatiotemporal cellular data
- Glycan reachability analysis: A bottleneck-aware framework for inferring tissue-specific glycan biosynthetic potential from transcriptomics
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- Next-generation metabolic models: From multi-constraint integration to AI-driven whole-cell kinetic simulation
- Unleashing the potential of whole-cell modelling one step at a time
- The evolution of standards in systems biology: From metabolic and multi-scale to whole-cell models
- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
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