Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Deep Explainability: Spin-Geometrical Neural Meta-Structures. (arXiv:2311.16111v1 [q-bio.NC])
- Algorithmic approach for an unique definition of the next generation matrix. (arXiv:2311.16686v1 [q-bio.PE])
- Explaining Deep Learning Models for Age-related Gait Classification based on time series acceleration. (arXiv:2311.12089v2 [cs.LG] UPDATED)
- Low-dimensional controllability of brain networks. (arXiv:2311.11132v3 [q-bio.NC] UPDATED)
- H-Packer: Holographic Rotationally Equivariant Convolutional Neural Network for Protein Side-Chain Packing. (arXiv:2311.09312v2 [q-bio.BM] UPDATED)
- Defining the boundaries: challenges and advances in identifying cells in microscopy images. (arXiv:2311.08269v2 [q-bio.QM] UPDATED)
- Using large language models to study human memory for meaningful narratives. (arXiv:2311.04742v2 [cs.CL] UPDATED)
- A rigorous benchmarking of methods for SARS-CoV-2 lineage abundance estimation in wastewater. (arXiv:2309.16994v2 [q-bio.GN] UPDATED)
- Embed-Search-Align: DNA Sequence Alignment using Transformer Models. (arXiv:2309.11087v2 [q-bio.GN] UPDATED)
- PoseBusters: AI-based docking methods fail to generate physically valid poses or generalise to novel sequences. (arXiv:2308.05777v3 [q-bio.QM] UPDATED)
- High-throughput and scalable single cell proteomics identifies over 5000 proteins per cell
- Proneural - Mesenchymal antagonism dominates the patterns of phenotypic heterogeneity in Glioblastoma
- Differential proteome diversification in yeast populations: modes of short-term adaptation and fitness outcomes
- Translation variation across genetic backgrounds reveals a post-transcriptional buffering signature in yeast
- Making predictions using poorly identified mathematical models
- Differential logistic PCA for large-scale comparison of GSMMs and pathway analysis
- Unraveling Coinfection Dynamics into 100 Whole Genome of Diarrheal Pathogens: A Genome-to-Systems Biology Approach with Plesiomonas shigelloides
- Energy Landscape near Glioma Decipher the Role of Glioma Stem Cell within Glioma Hierarchy
- A modular model integrating metabolism, growth, and cell cycle predicts that fermentation is required to modulate cell size in yeast populations
- Modulation of dysbiotic vaginal complications by cervical mucus revealed in linked human vagina and cervix chips
- Relationship between Polyunsaturated Fatty Acids and Inflammation: evidence from cohort and Mendelian randomization analyses
- Exploring the association between cannabis and opioid use among adults in Washington State: Estimates from a Cross-Sectional Survey
- Genotypes and associations with symptoms in primary ciliary dyskinesia
- Obesity Prevention Efforts in France, Italy, and Japan - A Scoping Review Protocol
- The association between SARS-CoV-2 infections in English primary and secondary school children and staff, and infections in members of their household in the schoolyear 2020-2021: a self-controlled case-series analysis
- Sex differences in health-related quality of life and poverty risk among older people living with HIV in Spain: a cross-sectional study
- Antibiotic Utilisation Patterns in Tanzania: A Retrospective Longitudinal Study Comparing Pre- and Post-COVID-19 Pandemic Using Tanzania Medicines and Medical Devices Authority Data
- Natural immune boosting can cause synchrony in susceptibility and outbreaks of respiratory infections with rapidly waning immunity
- The association between parental, obstetric, socioeconomic, and lifestyle factors and the development of childhood obesity: A danish cohort study.
- Wastewater monitoring of SARS-CoV-2 gene for COVID-19 epidemiological surveillance in Tucuman Argentina
- PepCNN deep learning tool for predicting peptide binding residues in proteins using sequence, structural, and language model features
- Conditions under which faithful cultural transmission through teaching promotes cumulative cultural evolution
- PhenoSV: interpretable phenotype-aware model for the prioritization of genes affected by structural variants
- Multi-source transfer learning for facial emotion recognition using multivariate correlation analysis
- scDREAMER for atlas-level integration of single-cell datasets using deep generative model paired with adversarial classifier
- Optimal control of gene regulatory networks for morphogen-driven tissue patterning
- A new age in protein design empowered by deep learning
- Becoming fluent in proteins
- Millennia-long epigenetic fluctuations generate intragenic DNA methylation variance in Arabidopsis populations
- Genome-wide identification of overexpression and downregulation gene targets based on the sum of covariances of the outgoing reaction fluxes
- Marine reserves promote cycles in fish populations on ecological and evolutionary time scales
- Quantifying leadership in climate negotiations: A social power game
- A mean-field description for the expansion kinetics of activated T cell populations
- Emergent structure and dynamics of tropical forest-grassland landscapes
- Stochastic Turing patterns of trichomes in Arabidopsis leaves
- Evolution of cooperation in a two-species system with a common resource pool
- Coevolutionary stability of host-symbiont systems with mixed-mode transmission
- Gene drives for the extinction of wild metapopulations
- On the limits to invasion prediction using coexistence outcomes
- The eco-evolutionary dynamics of Batesian mimicry
- Nonlinear control designs and their application to cancer differentiation therapy
- Deconstructing the integrated oscillator model for pancreatic β-cells
- Inflammation propagation modeled as a reaction–diffusion wave
- On the treatment of melanoma: A mathematical model of oncolytic virotherapy
- A two-galectin network establishes mesenchymal condensation phenotype in limb development
- On convolutional neural networks for selection inference: Revealing the effect of preprocessing on model learning and the capacity to discover novel patterns
- A Bayesian inference method to estimate transmission trees with multiple introductions; applied to SARS-CoV-2 in Dutch mink farms
- Biased placement of Mitochondria fission facilitates asymmetric inheritance of protein aggregates during yeast cell division
- The SKMT Algorithm: A method for assessing and comparing underlying protein entanglement
- Why are different estimates of the effective reproductive number so different? A case study on COVID-19 in Germany
- Pattern Formation in Mesic Savannas
- Empirical Quantification of Predictive Uncertainty Due to Model Discrepancy by Training with an Ensemble of Experimental Designs: An Application to Ion Channel Kinetics
- Optimizing Antimicrobial Treatment Schedules: Some Fundamental Analytical Results
- Temporary Cross-Immunity as a Plausible Driver of Asynchronous Cycles of Dengue Serotypes
- A Nonlinear Delay Model for Metabolic Oscillations in Yeast Cells
- The impact of natural disasters on the spread of COVID-19: a geospatial, agent-based epidemiology model
- The effect of men who have sex with men (MSM) on the spread of sexually transmitted infections
- Assessing countermeasures during a hepatitis A virus outbreak among men who have sex with men
- Analysis of international traveler mobility patterns in Tokyo to identify geographic foci of dengue fever risk
- On the relationship between inhibition and receptor occupancy by nondepolarizing neuromuscular blocking drugs
- Oligomer formation of SARS-CoV-2 ORF8 through 73YIDI76 motifs regulates immune response and non-infusion antiviral interactions
- Developmental landscape of computational techniques to explore the potential phytochemicals from Punica granatum peels for their antioxidant activity in Alzheimer’s disease
- Hierarchical machine learning model predicts antimicrobial peptide activity against Staphylococcus aureus
- Unraveling the role of thermal fluctuations on the exciton structure of the cryptophyte PC612 and PC645 photosynthetic antenna complexes
- Improved computational epitope profiling using structural models identifies a broader diversity of antibodies that bind to the same epitope
- Anti‐microbial resistance and aging—A design for evolution
- Recent insights explaining susceptibility to endometriosis—From genetics to environment
- An update on the roles of transcription factor Ets1 in autoimmune diseases
- Mathematical models of cystic fibrosis as a systemic disease
- Network medicine for patients' stratification: From single‐layer to multi‐omics
- Modelling microtube driven invasion of glioma
- Characterization of differential susceptibility and differential infectivity epidemic models
- Threshold behavior and exponential ergodicity of an sir epidemic model: the impact of random jamming and hospital capacity
- A mathematical model for axonal transport of large cargo vesicles
- Mutational meltdown in asexual populations doomed to extinction