Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Data-driven discovery of dynamical models in biology
- scMTNI: Leveraging cellular trajectory and context to infer dynamic GRNs from single-cell multi-omics data
- One-step decellularization of porcine uterine tissue for developing alginate-decellularized uterine ECM hydrogel for uterine tissue engineering
- Psychological Imagination Networks Show Cross-Population Centrality and Clustering Alignment in Humans That Large Language Models Fail to Replicate
- You ain't seen nothing, and yet: Future biochemical concentrations can be predicted with surprisingly high accuracy
- A frozen rate operator from the complete larval connectome: degree and weight govern the gross response, exact wiring governs input routing and mushroom-body modes
- Stimulus Motion Perception Studies Imply Specific Neural Computations in Human Visual Stabilization
- Affinage: genome-scale mechanistic gene annotation from the published literature
- A Novel Machine Learning Approach for Central Nervous System Tumor Classification from DNA Methylation
- Operant Conditioning in Indian Free-Ranging Dogs: Effects of Positive and Threatening Cues on Sociability
- Biobehavioral synchrony across species: Evidence for multi-level regulatory dynamics in human–canine dyads
- Curcumin and Sulforaphane Preserve Mobility in Aging Caenorhabditis elegans via Distinct yet Complementary Transcriptional Signatures
- Self-organized traveling waves in a synthetic multicellular reaction-diffusion system
- Comparative metabolomics identifies recurrent age-associated pathway remodeling across species
- Combining prior knowledge and transcriptomics data for logic models of patient subgroups
- A Multiscale Computational Framework Linking Cortical Microtubule Dynamics to Plant Tissue Morphogenesis
- Mechanistic reconstruction of receptor-to-transcription factor signaling integrating prior knowledge and omics
- K9HeartCircDB: A circRNA Atlas of Tachypacing-Induced Canine Dilated Cardiomyopathy
- Humanin analogue promotes metabolic reprogramming to protect the ischemic heart
- Drug repurposing for rare diseases via a gene-bridged heterogeneous knowledge graph and graph attention network
- Interaction-based metabolomics identifies serum modifiers of the clinical expression of Alzheimer's disease pathology
- Multi-Omic Analyses Reveal Bidirectional Genetic Links and Convergent Inflammatory-Neuronal Signatures Between Frailty, Chronic Pain, and Rheumatoid Arthritis
- Excess maternal deaths and maternal mortality ratios during the COVID-19 pandemic period: a global country-level counterfactual modelling study
- PrEP-associated screening reduces N. gonorrhoeae transmission but increases case notifications among MSM: a modeling study
- Prognostic Association of Handgrip-Defined Probable or Possible Sarcopenia Status and Polygenic Risk with 10-Year Fracture Incidence among Black, Hispanic, and White Women: A Women's Health Initiative Study
- Cancer trends in England in younger adults from 2001-2023: comparing incidence, mortality and stage at diagnosis
- Cluster analysis of ME/CFS symptoms in DecodeME reveals two subgroups and a link to onset type
- Childhood emotional symptom trajectories in three generationally and socio-ethnically distinct UK birth cohorts
- The Inflammatory Cascade Through Discrimination, Socioeconomic Status, and Body-Mass Index
- Impact of the HPV vaccination programme on anal HPV infection in gay, bisexual and other men who have sex with men: multi-site enhanced surveillance study in specialist sexual health services in England
- Artificial intelligence for food innovation
- Towards the construction of a virtual yeast
- Interpretable spatial multi-omics data integration and dimensionality reduction with SpaMV
- RNAbpFlow: base pair-augmented SE(3) flow matching for conditional RNA 3D structure generation
- Deep residual learning for molecular force fields
- Phased variability in cell fate determination orchestrates antibody evolution
- Immune BioGraphy: A tale of graphical approaches in systems and virtual immunology
- Transcriptional competition biases the effects of second messengers in Escherichia coli
- Dango: Predicting higher-order genetic interactions
- Fusing imaging and metabolic modeling via multimodal deep learning in ovarian cancer
- Daring few, patient many: Division of labor in decentralized foraging collectives
- Modeling framework to demonstrate elimination of a vector population: Tsetse elimination in Chad
- Spatial and temporal prediction of Aedes aegypti populations with atmospheric and urban forms dependence
- Mathematical modeling of JAK2V617F clonal expansion in a general population cohort
- Correction for Zhang et al., Deep learning framework for quantifying self-organization in Myxococcus xanthus
- Collective dynamics and synchronization of coupled hair-bundle models with elastic and viscous interactions
- Varying parameter ranges alters both partial rank correlation coefficient results and phenomenological behavior when modeling the epithelial mesenchymal transition
- Adaptive social distancing under variant-specific transmission dynamics in a spatial SEIIR model with reinforcement learning
- Long-range interaction of multi-spiral cAMP waves in Dictyostelium discoideum amoeba aggregation
- A physiologically based mathematical model describing estradiol and progesterone actions on glucose-insulin dynamics throughout the menstrual cycle
- Modeling and analysis of the effect of dissolved oxygen on the dynamics of Plankton system in shallow lakes
- Simultaneous parameter and function discovery in differential equations using physics-informed neural networks
- Global dynamics of an intraguild predation predator–prey model with density-dependent velocity suppression
- Impacts of cooperative hunting and Allee effect on the dynamics of a three-species system with sexually reproducing top predators
- Optimal experiment design for practical parameter identifiability and model discrimination
- Mobility data resolution needed to inform predictive models of spatial epidemic spread from mobile phone data
- Another 10 years of PLOS Computational Biology: A data-driven reflection on trends in genomics research
- Redefining and estimating the early-phase reproduction ratio for epidemic outbreaks in spatially structured populations
- Optimized phenotype definitions boost GWAS power
- DeepMethylation: A deep learning framework for tissue-specific DNA methylation prediction and functional variant annotation
- Effects of Seasonal Births and Predation on Disease Spread
- Identifiability, Sensitivity, and Genetic Algorithms in Bacterial Biofilm Selection Models
- Slow Evolution Towards Generalism in a Model of Variable Dietary Range
- CBINN: Cancer Biology-Informed Neural Network for Unknown Parameter Estimation and Missing Physics Identification
- A Cost-Sensitive Behavioral Modeling Analysis of the Early Identification and Control of Infectious Diseases
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- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- A dialog between cell adhesion and topology at the core of morphogenesis
- Computational models of cellular bioenergetics indicate the role of Ca2+-regulated pyruvate dehydrogenase in metabolic remodeling
- Dynamics of cell fate patterning in discrete multicellular systems
- Primer: Drug discovery and patient-derived organoids
- Dynamic resource allocation in eukaryotic Resource Balance Analysis
- Spatiotemporal SEIQR Epidemic Modeling with Optimal Control for Vaccination, Treatment, and Social Measures
- Discrete-time exploitative competition model of different stage-specific predators
- Phenotypic plasticity trade-offs in an age-structured model of bacterial growth under stress
- Superinfection and the hypnozoite reservoir for Plasmodium vivax: a multitype branching process approximation