Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Task-conditioned probing of instruction-tuned multimodal LLMs: Region-specific brain alignment patterns under naturalistic stimuli
- Cell State Transitions Beyond the Small-Noise Limit
- Multi-Modal Machine Learning for Population- and Subject-Specific lncRNA-Type 2 Diabetes Association Analysis
- CRANE: Correcting Errors in Raw Nanopore Signals Using Hidden Markov Models
- Computational Auditory Periphery Models: the Return of the Rodent
- Compartmental-reaction diffusion framework for microscale dynamics of extracellular serotonin in brain tissue
- A brief review of evolutionary game dynamics in the reinforcement learning paradigm
- Machine-Learning-Enhanced Non-Invasive Testing for MASLD Fibrosis: Shallow-Deep Neural Networks Versus FIB-4, Tabular Foundation Models, and Large Language Models
- Inferring infectiousness: a joint model of the within-host viral kinetics of SARS-CoV-2
- Artificial Pancreas Implantables -- How Healthcare Professionals May Deal With DIY Bio Cases
- Bayesian Parameter Balancing Enables Robust and Consistent Estimation of Kinetic Parameter Uncertainty
- Liver-to-Atria Inflammatory Axis Driving Arrhythmia
- Benchmarking Static Gene Regulatory Network Reconstruction and Dynamic Transition Probing in Single-Cell Foundation Models.
- Computational screen of promoter configurations that robustly sense transcription factor dynamics
- Systemic metabolic correlates of environmental sensitivity in group-housed mice
- From time-course expression to gene regulation: direct linear ODE inference without finite-difference approximation
- Global cell-state and gene-program representations reveal conserved and context-specific perturbation responses of cells
- A Far-Red FRET biosensor for AMPK enables multiplexed imaging of single-cell bioenergetic homeostasis
- Discovering conserved regulatory modules in predicted gene regulatory networks across species
- Co-expression network analysis reveals repression of Igf2bp2 by REV-ERBβ in skeletal muscle
- Using human genetics to understand the effect of modulating targets of antihypertensive drugs in pregnancy
- Dissemination of dementia supporters and residents' attitudes and recognition related to dementia in Japan: a municipal-level ecological study
- Socio-geographic factors associated with Lyme disease in children
- Climatic suitability for leishmaniasis at global and European scales
- Pandemic-related changes in postpartum depression and anxiety among breastfeeding mothers: a systematic review and meta-analysis
- Using human genetic variation to estimate the effect of lipoprotein(a) lowering on pregnancy outcomes
- Mapping U.S. POINTER Cognitive-Slope Gains Onto Predicted Clinical Progression: An External-Cohort Translation Analysis With Exploratory Economic Thresholds
- Circadian Disruption Induces Testosterone Decline and Male Reproductive Impairment: Evidence from Epidemiological Studies and Animal Experiments
- Child neurodevelopmental risk and parental depression at 2 years in the French ELFE birth cohort
- A Reproducible Pipeline for Processing Commercial Wearable Step-Count Data in Aging Cohorts: Application and Evaluation in the STRRIDE-PD Reunion Study
- Deep neural operator for free boundary problems
- Pan-cancer analysis of single-cell profiles with polygenic signals reveals genetic influences on tumor immunity across cancers
- Interpretable deep learning framework for mapping E3–substrate binding interfaces
- Endometriosis-related alterations in the endometrium revealed by integrated single-cell and AI-powered approaches
- Author Correction: Pharmacological markers of HIV prevention for oral pre-exposure prophylaxis in men who have sex with men
- Tuning beta cells to the right frequency
- How is agentic AI changing how we do science?
- The metabolome of an E. coli CRISPRi library identifies benefits of minimal metabolite levels and targets for engineering
- Recurrent neural chemical reaction networks that approximate arbitrary dynamics
- TarDis: Achieving robust and structured disentanglement of multiple covariates
- Detecting changepoints in dynamical systems: Modeling time-varying transmission of seasonal influenza
- Data-driven particle dynamics: Structure-preserving coarse-graining for emergent behavior in nonequilibrium systems
- Reconstructing ancient genomes from gene counts: A robust likelihood framework with sampling bias correction
- Stable flapping flight in morphological space: Model, simulation, and explicit stability criteria
- Novel Knotted Solenoid fold with order-shifted coil arrangement leads to nontrivial 31 topology
- A theoretical model for the influence of age, race and ethnicity on retinal mitochondria dysfunction
- Mathematical model of tumor-macrophage interactions: Elucidating the tumor-driven macrophage phenotype reprogramming
- Optimisation of pembrolizumab therapy for de novo metastatic MSI-H/dMMR colorectal cancer using data-driven delay integro-differential equations
- Modelling the role of phages in biofilm ecosystems and the spread of antimicrobial resistance
- In silico investigation of the role of local and global inflammation-driven feedback in myelopoiesis and clonal cell expansion
- The dynamics of hepatitis B transmission with treatment and vaccination: A case study in the Ili region of Xinjiang, China, by a physics-informed neural networks approach
- Model-supported patient stratification using multi-objective synergy optimization in combination therapy
- Plant tolerance is explained by resource-based plant–nematode interactions
- Erratum to “How Mathematical Forms of Chemotherapy and Radiotherapy Bias Model-Optimized Predictions: Implications for Model Selection” [Mathematical Biosciences, volume 396 (2026) 109685]
- Mathematical modeling of neural stem cell migration within brain using multi-fiber tractography
- DENcode: A model for haplotype-informed transmission probability of dengue virus
- LSTM-attention-guided graph neural networks for integrated genotype–Environment modeling in maize yield prediction
- Multimodal data integration to determine viral and innate immune kinetics in human airway epithelium
- Dual-channel graph learning reveals similarity and complementarity in protein-protein interaction networks
- Coevolutionary dynamics of viruses and their defective interfering particles
- Characterization of the Killing-Rate for a Pest Control Model: The Cumulative Lethal Rate Based on Pesticide Dose-Response Relation
- Ensemble Optimal Control for Managing Drug Resistance in Cancer Therapies
- The Phylogenetic Structure of $$\beta $$-diversity: Covariance Matrix Sparsification of Critical Beta-splitting Trees
- Modeling the effects of vector species composition and temperature on the risk of dengue virus
- Identifiability in Epidemic Models with Prior Immunity and Under-Reporting
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- Primer: Drug discovery and patient-derived organoids
- Systems biology at the body scale: Toward adaptive digital twins in precision medicine
- Disruption of calcium homeostasis by β-amyloids: Insights from dynamical models
- Bifurcation theory and gene regulatory networks: A framework for understanding cell fate decisions in retinal regeneration
- Complex versus complicated systems biology, universality versus detailed modeling
- Threshold dynamics for a stage-structured model with non-local impulsive birth in a heterogeneous environment
- Dynamic analysis of an HIV stochastic time-delay differential equations incorporating two infection pathways and CTL immune response
- Consistent multiscale modelling of movement and habitat selection
- Numerical Analysis of BIMs for Stochastic SIR and SIS Models with Variable Contact Diffusion Rates
- Exploring the effective strategies for allocating limited resources to minimize cholera outbreaks