Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Machine Learning for RNA Secondary Structure Prediction: a review of current methods and challenges
- Tool Choice Matters: Evaluating edgeR vs. DESeq2 for Sensitivity, Robustness, and Cross-Study Performance
- Agentic Discovery of Cryomicroneedle Formulations
- A novel sustainable role of compost as a universal protective substitute for fish, chicken, pig, and cattle, and its estimation by structural equation modeling
- Protein Autoregressive Modeling via Multiscale Structure Generation
- From Division to Decision: Leveraging Temporal Cell-Stage Segmentation for Embryo Transferability Prediction
- Elemental Stoichiometry as an Ecological Biosignature with Applications to Life Detection
- GraphPINE: Graph Importance Propagation for Interpretable Drug Response Prediction
- Informational blueprints reveal condition-dependent gene regulatory architectures
- A putative model of the gut-muscle axis in aged livestock
- Benchmarking Static Gene Regulatory Network Reconstruction and Dynamic Transition Probing in Single-Cell Foundation Models.
- Computational screen of promoter configurations that robustly sense transcription factor dynamics
- Systemic metabolic correlates of environmental sensitivity in group-housed mice
- From time-course expression to gene regulation: direct linear ODE inference without finite-difference approximation
- Global cell-state and gene-program representations reveal conserved and context-specific perturbation responses of cells
- A Far-Red FRET biosensor for AMPK enables multiplexed imaging of single-cell bioenergetic homeostasis
- Discovering conserved regulatory modules in predicted gene regulatory networks across species
- Simultaneous single-cell profiling of the transcriptome and proteome
- Co-expression network analysis reveals repression of Igf2bp2 by REV-ERBβ in skeletal muscle
- Genome-scale community metabolic modeling of maize root-associated microbiota shows that root exudates stimulate diverse metabolic interactions
- Climatic suitability for leishmaniasis at global and European scales
- Socio-geographic factors associated with Lyme disease in children
- Dissemination of dementia supporters and residents' attitudes and recognition related to dementia in Japan: a municipal-level ecological study
- Pandemic-related changes in postpartum depression and anxiety among breastfeeding mothers: a systematic review and meta-analysis
- A Reproducible Pipeline for Processing Commercial Wearable Step-Count Data in Aging Cohorts: Application and Evaluation in the STRRIDE-PD Reunion Study
- The Sparse Matrix of Drug Discovery: Sex, Race, and a Genomic Equity Index Across 40.8 Million Patients in 77,770 Clinical Trials
- Circadian Disruption Induces Testosterone Decline and Male Reproductive Impairment: Evidence from Epidemiological Studies and Animal Experiments
- Child neurodevelopmental risk and parental depression at 2 years in the French ELFE birth cohort
- Derivation and validation of clinical prediction models for viral etiologies of acute diarrhea in North American children presenting for emergency care
- Accounting for Uncertainty in the Null Benchmark in Two-Stage Phase II Trials
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- Detecting changepoints in dynamical systems: Modeling time-varying transmission of seasonal influenza
- Data-driven particle dynamics: Structure-preserving coarse-graining for emergent behavior in nonequilibrium systems
- Reconstructing ancient genomes from gene counts: A robust likelihood framework with sampling bias correction
- Stable flapping flight in morphological space: Model, simulation, and explicit stability criteria
- Novel Knotted Solenoid fold with order-shifted coil arrangement leads to nontrivial 31 topology
- Mathematical model of tumor-macrophage interactions: Elucidating the tumor-driven macrophage phenotype reprogramming
- Optimisation of pembrolizumab therapy for de novo metastatic MSI-H/dMMR colorectal cancer using data-driven delay integro-differential equations
- Modelling the role of phages in biofilm ecosystems and the spread of antimicrobial resistance
- In silico investigation of the role of local and global inflammation-driven feedback in myelopoiesis and clonal cell expansion
- The ideal free distribution in temporally varying environments
- The dynamics of hepatitis B transmission with treatment and vaccination: A case study in the Ili region of Xinjiang, China, by a physics-informed neural networks approach
- Model-supported patient stratification using multi-objective synergy optimization in combination therapy
- Plant tolerance is explained by resource-based plant–nematode interactions
- Erratum to “How Mathematical Forms of Chemotherapy and Radiotherapy Bias Model-Optimized Predictions: Implications for Model Selection” [Mathematical Biosciences, volume 396 (2026) 109685]
- Mathematical modeling of neural stem cell migration within brain using multi-fiber tractography
- DENcode: A model for haplotype-informed transmission probability of dengue virus
- LSTM-attention-guided graph neural networks for integrated genotype–Environment modeling in maize yield prediction
- Multimodal data integration to determine viral and innate immune kinetics in human airway epithelium
- Dual-channel graph learning reveals similarity and complementarity in protein-protein interaction networks
- Coevolutionary dynamics of viruses and their defective interfering particles
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- Primer: Drug discovery and patient-derived organoids
- Systems biology at the body scale: Toward adaptive digital twins in precision medicine
- Disruption of calcium homeostasis by β-amyloids: Insights from dynamical models
- Bifurcation theory and gene regulatory networks: A framework for understanding cell fate decisions in retinal regeneration
- Complex versus complicated systems biology, universality versus detailed modeling
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