Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.

- Feed has no items.

- A signaling network motif couples protein expression levels and intracellular localization
- Selectively Advantageous Instability and Information Theory in Sex-specific Aging
- Electrical Stunning does not affect Brain Tissue Integrity and Stress Response in Larval Zebrafish
- Simulations predict that alterations in balance control contribute to the higher cost of walking with a prosthesis
- Net conversion calculations of catabolic pathways
- Divergent nitrogen transition pathways during global agricultural development
- Robust and Quality-of-Life-Aware Treatment Protocols in NSCLC using Deep Reinforcement Learning
- Sobetirome, a thyroid hormone receptor beta agonist, is a potential therapeutic agent for pulmonary fibrosis
- Mechanistic modeling of bacterial translation initiation across growth conditions
- PhysiCelldFBA: Linking single-cell genome-scale metabolism to spatially explicit multicellular dynamics

- Heteroresistance to first-line beta-lactams among Gram-negative bloodstream isolates reported susceptible by standard-of-care testing: a prospective two-centre study across a high- and a low-resistance setting
- Complementary and Alternative Medicine Therapies in relation to Self-Reported Better Sleep across Racial and Ethnic Groups in the United States
- Association between ABO Blood Group and COVID-19 Pneumonia Severity: A Cross-Sectional Study from Ethiopia's First Designated COVID-19 Treatment Center
- Nowcasting outbreak case and death counts from open-source reporting: a validation on the 2026 Ebola (Bundibugyo) outbreak in the Democratic Republic of the Congo
- Aggregation of mortality data by place and cause mask underlying trends in COVID-19 excess mortality
- Low Coverage, Moderate Knowledge, And Limited Trust: An Assessment of Knowledge, Attitudes, And Perceptions Towards Indoor Residual Spraying in Masala, Ndola, Zambia
- Associations between early-life socioeconomic, family and child factors, and anxiety and depression co-developmental trajectories in Brazil - analysis of the 2004 Pelotas Birth Cohort
- Long-Term Mortality with Contemporary Multivessel PCI Versus CABG in Patients with Diabetes and Multivessel Disease: A Population-Based Retrospective Cohort Study
- Prediction of Type 2 Diabetes using genomics and proteomics: the HUNT Study
- Using large language models to facilitate literature review and data extraction for infectious disease models: COVID-19 as a test case

- Feed has no items.

- Mechanical feedback drives fractal airway organization
- Beyond differential expression: Differential variability as an underappreciated axis in transcriptomics
- The emergence of the fractal bronchial tree
- High-throughput DNA engineering by mating bacteria
- A data-driven modeling framework for mapping genotypes to synthetic microbial community functions

- Correction for Zhang et al., Reconstructing the early spatial spread of pandemic respiratory viruses in the United States
- Uncovering dynamic human brain phase coherence networks
- Stochasticity and probabilistic trajectory scoring are essential for data-driven closures of chaotic systems
- Group size effects and collective misalignment in LLM multi-agent systems
- Many-eyes and sentinels in selfish and cooperative groups

- A stochastic agent-based model for naive CD8+ T cell recirculation dynamics in mice
- A revised ribosome–antibiotic model with proportional feedback synthesis explains recovery from translation inhibition
- Pandemic waves as the outcome of coupled social and disease dynamics: A mathematical modelling study
- A systems-based analysis of feedback structure and characteristic timescales in turnover-mediated mechanical adaptation
- From signal dynamics to cell fate: The role of learning duration

- Permanent charge effects on current-voltage relations via classical Poisson-Nernst-Planck systems under relaxed electroneutrality boundary conditions
- Perspective: Allee effects in theory and reality
- Hybrid mechanistic-machine learning models in biosciences: Causality, forecasting, and lab-to-field translation
- Logistic gene regulatory networks: A modeling framework beyond Hill functions
- Beyond : How vaccination and post-infection mortality drive epidemic persistence and oscillations

- Computer models predict differential dendritic vulnerability with ischemia and spreading depression
- Exploring heterogeneity in mosquito exposure and attraction and its implications for malaria transmission
- The value of a prophage-borne defense system in phage–phage competition
- Not every gene is special: Modelling scale controls the false discovery rate when analysing high-throughput sequencing data
- Clusters, fingers, and singles: A mechanical landscape of tumor invasion

- Feed has no items.

- Feed has no items.

- Feed has no items.


- The evolution of standards in systems biology: From metabolic and multi-scale to whole-cell models
- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- Amniote gastrulation in silico
- A dialog between cell adhesion and topology at the core of morphogenesis

- Feed has no items.