Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Stand-In Effects and Pooling Amplification: Lessons from Biological World Models for Testing Action Effects
- ScaleBrain: A Scale-Consistent Framework for EEG Foundation Models
- DiffeoMorph: Learning Distributed 3D Morphogenesis with Rotation-Invariant Spectral Shape Matching
- Depletion Capture and Rayleigh--Onsager Dynamics in Receptor-Mediated Endocytosis
- Pyrite: Building and Benchmarking Protein-Ligand Pose Ranking Agents
- Reconstruction quality and restart repeatability are insufficient indicators of muscle synergy recovery by nonnegative matrix factorisation
- The Dose Makes the Poison: Exposure-Aware Evaluation of Generative Drug Design
- Measuring Robustness and Efficiency in a Connectome-Constrained Fly Visual System Model: Linking an Adversarial and a Perceptual Illusion
- ProTEUS: A mutation-resolved world model for closed-loop protein evolution
- Quantifying the impact of 3D diffusion and local versus global removal by surface deposition on indoor airborne transmission
- Homogeneous network inference for subtype-stratified master regulator analysis in cancer
- Parsimonious Creatures: Building Gene Regulatory Networks Robust to Somatic Evolution
- Multi-Enzyme Data-Independent Acquisition Mass Spectrometry for Proteoform-Aware Single-shot Proteomics
- A single-cell transcriptomic atlas of the pigtail macaque lung
- Cell cycling throttles epithelial--mesenchymal transition
- Choice of annotation data significantly impacts automated reconstruction of genome-scale metabolic networks
- Calibrating developmental dynamics from single-cell atlases: lineage paths outrun least-action routes
- Low-fidelity simulator selection for multi-fidelity inference of epithelial vertex models
- Dietary fibre combinations modulate gut microbiome composition and metabolic responses in zebrafish, with lasting effects on intestinal barrier gene expression
- Three-dimensional mapping of human lung fibrosis identifies spatial coupling between tissue microarchitecture and maladaptive repair states
- Data-driven estimation of the onset of heat-related mortality in five Indian cities
- Dengue among febrile patients in Ghana: prevalence and facility-level variation in a multisite surveillance study
- Mapping inequalities in dementia diagnosis in England: a Bayesian spatial analysis of disease prevalence and case ascertainment
- Reconstructing age-specific social contact patterns across 28 EU/EEA countries during the COVID-19 pandemic: linking non-pharmaceutical interventions to social mixing, 2020-2022
- Effect of starting metformin on severe and long COVID-19 among people living with type 2 diabetes in England: a new user cohort study in OpenSAFELY-TPP
- Lipidome-wide analysis of concurrent and longitudinal blood pressure patterns in school-aged children
- Unraveling the genetic architecture of the human mammillary bodies
- Sex-Specific Incidence of Hemorrhagic Stroke in Japan: An Integrated Population-Based Study
- Harmonization of microbiome data in the Environmental influences on Child Health Outcomes (ECHO) Cohort to analyze environmental influences on the child microbiome
- Relationship between Excess Mortality Derived from Death Counts and Age-Standardised Mortality Rates: The Case of Germany During the COVID-19 Pandemic
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- What is the future of genomic foundation models in biological research?
- CAR T cells from code to clinic: Framing modeling approaches with current translational research goals
- Sampling protein language models for functional protein design
- Let there be multifunctionality: Uncovering the dynamical zoo of the AC-DC genetic circuit
- High-throughput cell-free profiling of SARS-CoV-2 RBD variants enables rapid and quantitative in vitro affinity landscape mapping
- How Antoni Gaudí used math to make his basilica soar
- Intermittent Cauchy walks enable optimal 3D search across target shapes and sizes
- Some theoretical limitations of t-SNE
- Defining and measuring proximity to criticality based on univariate time series
- Local growth laws determine global shape of molluscan shells
- Unbeatable imitation of a friend
- Cognitive agent neuron: Learning and decision-making inspired by dopaminergic neurons
- The role of the lymphatic micro-vasculature in malignant tissue fluid and drug transport
- Model topology determines parameter accessibility in Markov models of voltage-gated ion channels
- From individual-based models to macroscopic dynamics of antimicrobial resistance
- Physics-informed neural networks for inverse identification of α1-adrenergic receptor non-desensitization mechanisms
- Quantifying network uncertainty in chemical reaction network inference
- Threshold dynamics and intervention strategy optimization in a maize-vector delayed system for streak virus disease
- Invariant image reparameterisation: Bridging symbolic and numerical methods for identifiability analysis, model reduction, and prediction
- Vaccination-driven suppression, stochastic variability, and contact saturation in HPV-cervical cancer transmission in India: A Black-Karasinski perturbation model
- FDTest: Fluctuation-dissipation theorem as a test for memory effects in brain dynamics
- Sphinx: An R package for adaptive spatial neighborhood modeling and functional analysis in spatial omics
- PhysInfer: A physics-constrained neural network for adaptive inference of transcriptional bursting from single-cell RNA-seq
- An antigen-specific protein language model guides CDR optimization for antibody design
- Burst-to-burst information resetting in sequential rhythmic neural activity
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- Efficient computational frameworks for whole-cell models
- Spatiotemporal multiscale models reveal how cross-scale coordination shapes human health and longevity
- Can we trust genome-scale metabolic models?
- Next-generation metabolic models: From multi-constraint integration to AI-driven whole-cell kinetic simulation
- Unleashing the potential of whole-cell modelling one step at a time
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