Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Mean-field analysis of a neural network with stochastic STDP
- The Connectome and the Quest for the Functional Logic of the Drosophila Early Olfactory System
- Ten simple rules for non-visual, reproducible and accessible bioinformatics
- ProteinZero: Self-Improving Protein Generation via Online Reinforcement Learning
- A statistical-mechanical framework for mechanically adaptive cytoskeletal organization
- The Thousand Brains Theory 2.0: An Extension for the Long-Range Connections of the Neocortical Heterarchy
- Novel models of trait evolution via an expansion of Lande's fitness function: The Ornstein-Uhlenbeck process meets the Little Prince's boa
- Decoding silent reading from non-invasive EEG
- Correlations at criticality in ecological communities
- PEtab SciML: an exchange format for specifying and training dynamic scientific machine learning models
- Evidence-constrained mechanistic synthesis for drug discovery
- Supervised Learning of Phosphopeptide Sequence Constraints Enables Global Prediction of SH2 Domain Binding
- A Biologically Informed Heterogeneous Graph Neural Network for Multi-Task Prediction of ncRNA-Metastasis-Cancer Interactions
- Proteoform Barcode: An Intuitive Visualization Framework for Top-Down Proteomics
- Small intestinal microbiota of undernourished women perturbs placentaldevelopment in mice
- Circadian Oscillation Detection Analysis and Comparison (CODAC):a Multicriteria Method to Estimate and Compare Rhythmicity
- Plantago lanceolata and Lolium perenne metabolite profiles, their impact on soil microbial community structures and soil biological nitrification inhibition.
- HI-JEPA: A World Model of Molecular Organization Learned from Measured Proximity
- Integrated Clinical and Proteomic Precision Subgrouping for Severe Dengue Endotype Signature
- A Structural Design Principle for Temperature Robustness in Biomolecular Circuits
- Causal Effects of Physical Activity and Sedentary Behavior on Healthcare Costs
- Childhood Bullying as a Cumulative Health Risk: A Dose-Response Analysis of Peer Victimization and Adult Mental and Behavioral Health Outcomes in Saudi Arabia
- Association of Physical Activity with Change in Physical Function in Individuals with Atrial Fibrillation: The Atherosclerosis Risk in Communities (ARIC) Study
- Development and Validation of Interpretable Machine Learning Models for Early Prediction of Low Birth Weight in Ethiopia: A Secondary Analysis of the Ethiopian Demographic and Health Survey
- A Nationally Representative Study of Complementary and Alternative Medicine Therapies in relation to Sleep Duration and Insomnia Symptoms among US Adults
- Genomic and proteomic evidence linking dental caries in childhood and adolescence to cardiometabolic diseases
- Detecting early loss of kidney function in a Sri Lankan cohort study of working age adults
- Parental smoking in children consulting for respiratory diseases in Switzerland
- Site-Specific Cancer Incidence among Clinical Subtypes of Newly Diagnosed Type 2 Diabetes in the United States
- Factors associated with rabies vaccination uptake among dog owners in Butaleja Town Council, Eastern Uganda: A cross-sectional study.
- CoxFormer enables spatial omics inference with multimodal generative modeling
- ALPaCA: Adapting Llama for Pathology Context Analysis to enable slide-level question answering
- A blinded, prospective benchmark of in silico antibody discovery anchored to experimental affinity and developability
- STADiffuser: high-fidelity simulation and full-view 3D modeling of spatial transcriptomics
- In silico trials for sex-specific patient inclusion criteria in cardiac resynchronization therapy
- Mechanical feedback drives fractal airway organization
- Beyond differential expression: Differential variability as an underappreciated axis in transcriptomics
- The emergence of the fractal bronchial tree
- High-throughput DNA engineering by mating bacteria
- A data-driven modeling framework for mapping genotypes to synthetic microbial community functions
- Group size effects and collective misalignment in LLM multi-agent systems
- Many-eyes and sentinels in selfish and cooperative groups
- Hyperedge approximation for stochastic processes on higher-order networks
- Attention to heterogeneous information sources affects epidemic outcomes
- Reply to Szöllősi and Williams: The observation threshold mitigates the bias of transient genes on ancestral reconstruction
- A systems-based analysis of feedback structure and characteristic timescales in turnover-mediated mechanical adaptation
- From signal dynamics to cell fate: The role of learning duration
- Origin of fast backward steps and detachment of kinesin motor under backward load
- The evolution of socially modulated dispersal
- Infection-age structured transmission model highlights the efficacy of case-finding operations
- Hierarchical mathematical modelling of patients with myeloproliferative neoplasms captures interferon-α treatment responses and allows for personalised and population predictions
- Seasonal impacts on brucellosis transmission mediated by live sheep supply-demand dynamics
- Coupled information-epidemic dynamics with emotional thresholds and behavioral regression on multiplex networks
- Bistability analysis of a hybrid notch-delta signaling model in a single cell interacting with fixed external proteins
- Exploration of hepatitis B virus infection dynamics through physics-informed deep learning approach
- CLDN18.2 antibody design with protein language models: A deep learning optimization framework
- A portable recalibration workflow for reference-based variant calling in non-human genomes
- Ten quick tips for causal analysis of biomedical omics data
- Enzyme kinetics shapes the growth response of metabolic networks
- ERFMTDA: Predicting tsRNA–disease associations using an enhanced rotative factorization machine
- Bacteriophage Density Influences the Rate of Resistance Evolution
- Metal-Ion-Mediated Amyloid-$$\beta $$ Aggregation in Alzheimer’s Disease: A Mathematical Model of Chelation and Inhibitory Therapies
- Making Ends Meet or Just Meeting at the Ends? Assessing End-to-End Distance in Folded RNA Sequences and Other Branched Structures
- Identifying Key Factors in Predicting Chikungunya and Zika Transmission Across French Polynesia and the French West Indies: A Data-Driven Probabilistic and Mathematical Modeling Approach
- Subtyping and Prediction of the Glucose Based on the Hybrid Modeling of Deep Learning and Dietary Stimulated Glucose Metabolism Dynamical Model
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- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- Amniote gastrulation in silico
- A dialog between cell adhesion and topology at the core of morphogenesis
- Computational models of cellular bioenergetics indicate the role of Ca2+-regulated pyruvate dehydrogenase in metabolic remodeling
- Mathematical modeling for a primitive form of habituation in an amoeba
- Positive equilibria in mass action networks: geometry and bounds
- The effect of treatment-induced resistance in a two-strain tuberculosis model with age structure and spatial diffusion
- Unattainable regions in the space of genetic relationships
- When reoxygenation fails: a dynamical model of HIF-1$$\alpha $$-mediated metabolic breakdown under hypoxia and SARS-CoV-2 infection