Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Accurate identification of communication between multiple interacting neural populations
- Scalable Inference-Time Annealing with Surrogate Likelihood Estimators
- Dynamics of learning to integrate in linear recurrent neural networks
- SFILES 2.0: An extended text-based flowsheet representation
- Information-Theoretic Requirements for Gradient-Based Task Affinity Estimation in Multi-Task Learning
- A sub-Riemannian model of the motor cortex with Wasserstein distance
- PRAXIS: Case-distilled and code-verified AI agents for biological research
- Parameter uncertainty in dynamical models: a practical identifiability index
- Querying Counterfactuals on Tissue Graphs with Supervised Disentanglement
- MetaboliSim: a Python implementation of the Mader model for dynamic and steady-state simulation of muscular energy metabolism
- Comparative Evaluation of DDA and DIA Based Proteomic Workflows in Beryllium Related Lung Disease
- Antifungal tolerance and resistance dynamics depend on infection load, drug treatment, and host innate immunity
- Purinergic signaling disrupts emergent patterns of multicellular coordination in basal Xenobots.
- PRIME: scalable, robust inference of mechanistic cell states from multimodal single-cell counts via probability generating functions
- Untargeted cord blood metabolomics reveals altered lipid metabolism in neonates with gastroschisis
- Organizing principles in the Nitrogen-Carbon Landscape of Marine Heterotrophic Bacteria
- Cellular Complexity and Systemic Immune Profiles across Ancestral Diversity in Thailand and Mainland Southeast Asia
- Clostridial acidogenesis product profiles are discontinuous: a thermodynamic hypothesis
- HIP-MS: An ultra-high-throughput, sensitive, and versatile affinity enrichment platform for static and dynamic interactome profiling
- Predictive Neuromechanical Simulation Explains Gait Biomechanics in Obesity
- Mortality in people with attention-deficit/hyperactivity disorder (ADHD): Examining how risk is embodied in a pooling of two prospective cohort studies
- Exploring emergency department attendance patterns during the UEFA European Football Championship 2024 in Germany
- Within-household transmission risk of pulmonary tuberculosis in the era of universal antiretroviral therapy
- Burden of Chronic Kidney Disease in China, 1990-2021: Findings from the 2021 Global Burden of Disease Study
- Limitations of cross-border containment strategies for Bundibugyo ebolavirus
- A Decade of the Center for Disease Control and Prevention's FluSight Influenza Forecasting
- Clonal Hematopoiesis of Indeterminate Potential Refines Cardiovascular Risk Stratification in Cardiovascular-Kidney-Metabolic Syndrome Stages 0-3
- Physical activity, fatty acids, and MASLD risk: Behavioural and metabolic factors jointly shaping liver health in populations
- Integrated cardiometabolic and nutritional risk profiling identifies pregnancy loss as a marker of systemic metabolic vulnerability
- Investigation of the continuous spread of SARS-CoV-2 in the post pandemic time - Insights into the reason for the sustained spread despite the establishment of population immunity
- Robust footprinting with sample-specific Tn5 bias correction for bulk and single cell ATAC-seq
- Evaluating the role of pretraining dataset size and diversity on single-cell foundation model performance
- Scaling up training dataset size for transcriptomic AI models is much pain with little gain
- A scalable approach to investigating sequence-to-function predictions from personal genomes
- Gene dependency-informed inference of response to targeted cancer therapies
- Tuning beta cells to the right frequency
- How is agentic AI changing how we do science?
- The metabolome of an E. coli CRISPRi library identifies benefits of minimal metabolite levels and targets for engineering
- Recurrent neural chemical reaction networks that approximate arbitrary dynamics
- TarDis: Achieving robust and structured disentanglement of multiple covariates
- Mean field game model of the impact of reductions in support on faculty research activity
- Symmetry-breaking thermomagnetic dynamics of ferrofluid: Oscillation, spontaneous rotation, and flow bistability under laser irradiation
- What leads to administrative bloat? A dynamic model of administrative cost and waste
- Traveling waves in a continuum model of schooling swimmers
- Detecting changepoints in dynamical systems: Modeling time-varying transmission of seasonal influenza
- Modelling the impact of vaccination-dependent contact rates on disease transmission: Applications to COVID-19
- A voter-model representation of the multi-allelic Moran process: Exact stationary distributions and diversity thresholds from well-mixed populations to complex networks
- Managed-bee supplementation may drive parasite-mediated exclusion of wild bees
- A model of STAT1-p53 coordination: Regulating p21 and PUMA to program cell fate under stress
- The effect of mutualistic interactions on diversity patterns in island biogeography
- Generalized quasispecies model with time delays and periodic fluctuations in replication
- Spatial segregation and aggregation induced by memory and maturation delays in a diffusive predator-prey system
- Threshold analysis for a diffusive SIS epidemic model with infection-age
- Anthropogenic noise reshapes community stability by disrupting parental care-mediated trophic feedbacks
- Dynamics in an almost periodic metapopulation with competition and habitat destruction: An exponential dichotomy based approach
- Retraction: Two Birds with One Stone? Possible Dual-Targeting H1N1 Inhibitors from Traditional Chinese Medicine
- Retraction: Identification of Potent EGFR Inhibitors from TCM Database@Taiwan
- Evolution of phenocopying in a dynamical model of developmental trajectories
- Multi-stable oscillations in cortical networks with two classes of inhibition
- Statistics of cortical representational drift can enable robust readout
- Virulence Evolution in Host Populations with Heterogeneous Immune Responses: The Weakening of the Uncommon Weak
- Stochastic Reaction Networks Within Interacting Compartments with Content-Dependent Fragmentation
- Travelling Waves in Gene Expression: A Mathematical Model of Cell-State Dynamics in Melanoma
- MNRS: Multi-Factor Network-Based Ranking Score for Detecting Critical Transitions of Complex Diseases Using Gut Microbial Data
- Inverse Statistics of Active Matter Trajectories to Distinguish Interaction Kernel Anisotropy from Emergent Correlations
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- A dialog between cell adhesion and topology at the core of morphogenesis
- Computational models of cellular bioenergetics indicate the role of Ca2+-regulated pyruvate dehydrogenase in metabolic remodeling
- Dynamics of cell fate patterning in discrete multicellular systems
- Primer: Drug discovery and patient-derived organoids
- Systems biology at the body scale: Toward adaptive digital twins in precision medicine
- Modelling the effect of antibody depletion for dose-response behavior of common immunostaining protocols
- Transient tumor-induced disruption of peristaltic flow: a magnetohydrodynamic modeling framework
- A framework for jointly modeling the natural history of ductal carcinoma in situ and invasive breast cancer
- Stochastic modelling and statistical inference for the time to extinction of a class of populations with sexual reproduction
- A hybrid framework for compartmental models enabling simulation-based inference