Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.

- A Bayesian Optimized Biquad Filter-Burg Model for Real-Time EEG Phase Estimation
- Agentic Literature Extraction Augments Targeted Protein Degradation Databases
- The Little Scientist: What Does the Scientific Method Buy an LLM Agent?
- System-Theoretic Analysis of Extended Cellular Potts Models for Tumor Invasion
- Cell-type-specific modularity in E/I networks shapes dynamical regimes and computational capabilities
- AgentCount: An Agentic Workflow for Traceable Colony Counting and Insight Generation from Agar Plate Images
- Limited knowledge exchange across biological subfields in agent-based modelling: an LLM-assisted bibliometric analysis
- Morpheus.AI: agents autonomously generate, execute and refine virtual tissue models
- BIOTRAM: Biochemistry-informed Transformer for Relative Abundance via Metabarcoding
- VenusGenome: Genome-Aware Masked Autoencoding for Microbial Genome Representation Learning

- Gene regulatory architecture in antibiotic resistance is optimized for specific dynamic regimens
- Intestinal molecular siphoning by engineered bacterial spores for non-systemic treatment of nicotine addiction
- Photographic age gap is associated with frailty and predicts survival in laboratory mice
- Enzyme-Constrained Metabolic Modeling Reveals CO2-Dependent Growth Control in Picochlorum celeri
- Mixing, competence, and commitment set the stability of cell identity
- Simulating the dynamics of gene regulatory systems at cellular scale
- Organelle Aging Predicts Human Disease
- Emergence and robustness of 3D complex tissue architectures from simple physical forces
- A Systems Theory of Cardiac-Autonomic Trajectories and Equilibria
- Stochastic and Heritable Responses in Cell-Size Regulation and Survival to pH Stress in C. glutamicum

- Before AI tells patients what to eat, it needs to know where they live: a cross-sectional ecological study of diabetes and food access in California and Michigan census tracts, with a spotlight on Metro Detroit and Metro Los Angeles
- The origin of the MV Hondius Andes outbreak
- Spatial distribution and factors associated with unmet need for family planning among women of reproductive age in Zambia: Evidence from the 2024 Zambia Demographic and Health Survey
- Determinants of Binge Drinking Among Current Alcohol Drinkers: A Cross-Sectional Analysis of the 2013 Health and Welfare Survey
- Biomarkers of ageing and lung function trajectory: a multi-omics study in a UK birth cohort
- Pandemic-Driven Shifts in RSV Diversity, Evolution, and Global Spread
- High vaccine coverage and non-pharmaceutical interventions decreased hospitalizations and deaths due to the Omicron variant in Newfoundland and Labrador, Canada
- Estimating duration in sex work from cross-sectional studies: a Bayesian global synthesis suggests shorter durations
- Association between trajectories of breastfeeding duration and infant health: Prospective cohort study
- Maternal ADHD and exclusive breastfeeding: A prospective community-based cohort study

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- Defining and measuring proximity to criticality based on univariate time series
- Local growth laws determine global shape of molluscan shells
- Taylor’s law beyond finite moments: A route to dynamic financial risk
- Learning dissipative chaotic dynamics with boundedness guarantees
- Generalized Taylor’s law for infinite-mean heavy-tailed data under dependence and heterogeneity

- Unbeatable imitation of a friend
- Cognitive agent neuron: Learning and decision-making inspired by dopaminergic neurons
- The role of the lymphatic micro-vasculature in malignant tissue fluid and drug transport
- Model topology determines parameter accessibility in Markov models of voltage-gated ion channels
- From individual-based models to macroscopic dynamics of antimicrobial resistance

- Asymptotic dynamics of a transboundary fishery model and the impact of fishing costs under competitive and cooperative scenarios
- Wastewater-informed agent-based modelling of hepatitis E transmission dynamics
- A bounded stochastic extended Boolean model for signal amplification, noise propagation, and feedback oscillation in cell signaling pathways
- A cancer-inspired metaheuristic for optimal control of breast cancer treatment
- Multistability and finite-time extinction in opinion-coupled competing epidemics

- Bayesian efficient coding
- Shapley fields reveal mosaic chemotopic organization in the mouse Olfactory bulb across diverse chemical feature sets
- Global sensitivity analysis for stochastic models of infectious diseases: Re-emergence of yellow fever virus in the Americas as a case study
- The influence of ensemble size and composition on the performance of combined real-time COVID-19 forecasts
- Folding without glutamine: Proteome-scale removal of a canonical amino acid

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- Efficient computational frameworks for whole-cell models
- Spatiotemporal multiscale models reveal how cross-scale coordination shapes human health and longevity
- Can we trust genome-scale metabolic models?
- Next-generation metabolic models: From multi-constraint integration to AI-driven whole-cell kinetic simulation
- Unleashing the potential of whole-cell modelling one step at a time

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