Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Theoretical morphology of a cichlid according to the approach of Systemic Morphometry
- SPATIA: Multimodal Generation and Prediction of Spatial Cell Phenotypes
- ECMSim: A high-performance interactive web application for real-time spatiotemporal simulation of cardiac ECM signaling and diffusion
- Rethinking Diffusion Models with Symmetries through Canonicalization with Applications to Molecular Graph Generation
- Flexible inference of evolutionary accumulation dynamics using uncertain observational data
- Emergence of Chimeras States in One-dimensional Ising model with Long-Range Diffusion
- Higher-Order Hit-&-Run Samplers for Linearly Constrained Densities
- Bistability to Quad-stability: Emergence of Hybrid Phenotypes & Enhanced Spatio-temporal Plasticity in Presence of Host-Circuit Coupling
- Gauge-Mediated Contagion: A Quantum Electrodynamics-Inspired Framework for Non-Local Epidemic Dynamics and Superdiffusion
- Spatiotemporal noise stabilizes unbounded diversity in strongly-competitive communities
- Spatial Rewiring of Enterocyte Identity in Celiac Disease
- Evolution on degenerate fitness landscapes is not neutral: curvature drives directional bias
- Multimodal gene embeddings for drug-target prediction and lineage reconstruction
- Integrating AI and causal genetics to prioritize therapeutic targets for aging and age-related diseases
- LC-MS profiling of prmt-1 and prmt-5 knockout C. elegans reveals PRMT-1 substrates and global proteome remodeling
- A mechanistic model of protein kinase A dynamics under pro- and anti-nociceptive inputs
- High-Resolution 3D Histology of the Murine Kidney Using Synchrotron X-Ray Micro-CT
- HiMaLAYAS: enrichment-based annotation of hierarchically clustered matrices
- Cell cycle-dependent protein dynamics in budding yeast resolved by deconvolution of bulk proteomics
- Fusion-driven post-transcriptional network orchestrates ferroptosis resistance, dormancy, and immune remodeling in PRCC-TFE3 renal cell carcinoma
- Methodological Guidance for Predictor Variable Selection for Adolescent Smoking Outcomes in Global Youth Tobacco Survey Using R and Python
- HPV prevalence and associated factors in Cameroon: a systematic review and meta-analysis
- Longitudinal clustering of health behaviours and their association with multimorbidity: Evidence from Understanding Society (UKHLS)
- Trajectories over time in the prevalence of substance and behavioral addictions and common mental health issues in Israel, 2022-2025
- COVID-19 hospitalizations in the Netherlands, 2023-2024: disease burden and vaccine effectiveness
- Assessing Resistome Host Range Across Water Reclamation in Three Geographically Distinct Communities using Hi-C Sequencing
- Modelling the role of human and vector behavioural patterns on the persistent transmission of Plasmodium falciparum malaria in Nigeria
- Incidence of dementia after a recent cancer diagnosis among people with HIV
- Assessing the risk of early-onset dementia within 5 years of cancer diagnosis
- Distribution of Vector Abundance and Infection Rates in Relation to Human Vector-Borne Disease Cases in Nebraska
- Parallel hierarchical encoding of linguistic representations in the human auditory cortex and recurrent automatic speech recognition systems
- De novo covalent drug generation with enhanced drug-likeness and safety
- Empowering genetic discoveries and cardiovascular risk assessment by predicting electrocardiograms from genotype
- Comparing decentralized machine learning and AI clinical models to local and centralized alternatives: a systematic review
- A novel approach to preeclampsia early prediction addressing predictive uncertainty due to missing data in clinical dataset
- Feed has no items.
- Strategy evolution on temporal hypergraphs
- Scaling laws for function diversity and specialization across socioeconomic and biological complex systems
- Leveraging probabilistic forecasts for dengue preparedness and control: The 2024 Dengue Forecasting Sprint in Brazil
- Reply to Cecchi and Palminteri: On the need to model temporal variation in learning rates
- Genuine learning biases persist after accounting for temporally decreasing learning rates: Insight from fitting six datasets
- Optimising chemotherapy for advanced high-grade serous ovarian cancer via delay-differential equations
- Age and generation-based model of metastatic cancer: From micrometastases to macrometastases
- The evolutionary success of angiosperms: a foundation of bioenergetic surplus
- Modeling how hunting strategies and pack size shape each other
- Local control of cellular proliferation underlies neuromast regeneration in zebrafish
- Modeling periodic transcriptions in tandem gene systems
- Why does nature force the creation of proteobacteria community in the estuarine ecosystem? - A theoretical model
- Traveling wave formation enables strain coexistence in a spatial model of bacterial cross-feeding
- Bifurcation analysis and fear-induced reactions in non-refuged prey with cooperative hunting among predators: Deterministic and stochastic dynamics
- A mathematical perspective on hypothesis-driven model construction: A case study in pea
- Information theoretic measures of neural and behavioural coupling predict representational drift
- MENDELSEEK: An algorithm that predicts mendelian genes and elucidates what makes them special
- Tutorial for variant interrogation in tumor samples
- Ten common misconceptions about Galaxy (and why they are wrong!)
- Bridging cancer cell-intrinsic driver genes and -extrinsic cell-cell communication with Driver2Comm
- A mathematical model to simulate the biological action of Infliximab on TNF-$$\alpha $$ in patients with Inflammatory Bowel Disease: the critical role of drug clearance
- A Multi-Region SEIR Model Incorporating Inter-County Mobility and Time-Dependent Transmission Dynamics: Application to COVID-19 Disease Outbreak Data in North Carolina.
- The Impact of Vacations on the Transmission Dynamics of Influenza A (H1N1)
- The Role of Fibroblast–Epithelial Cross-Talk on the Distribution of Distinct Fibroblast Phenotypes in the Intestinal Crypt
- Modelling Immune Dynamics in Locally Advanced MSI-H/dMMR Colorectal Cancer with Neoadjuvant Pembrolizumab Treatment: From Differential Equations to an Agent-Based Framework
- Feed has no items.
- Feed has no items.
- Feed has no items.
- Cell sorting models in tissue development
- Editorial overview: Mathematical modeling of disease processes
- Think before you fit: Parameter identifiability, sensitivity and uncertainty in systems biology models
- Machine-learned summary statistics for Bayesian inference of systems biology–model parameters: Opportunities and challenges
- Structural identifiability of compartmental models: Recent progress and future directions
- Infinitesimal homeostasis in mass-action systems
- Walks with jumps: a neurobiologically motivated class of paths in the hyperbolic plane
- The adaptation property in non-equilibrium chemical systems
- A Kermack–McKendrick type epidemic model with double threshold phenomenon (and a possible application to Covid-19)
- Noise-induced bimodality in self-regulated gene networks with nonlinear promoter transitions and fast dimerization