Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- CloudPred: Predicting Patient Phenotypes From Single-cell RNA-seq. (arXiv:2110.07069v1 [q-bio.QM])
- A Mathematical Model of Thyroid Disease Response to Radiotherapy. (arXiv:2110.07513v1 [physics.med-ph])
- Extreme exoworlds and the extremophile paradox. (arXiv:2110.06144v2 [q-bio.PE] UPDATED)
- Getting Genetic Ancestry Right for Science and Society. (arXiv:2110.05987v2 [q-bio.PE] UPDATED)
- Role of assortativity in predicting burst synchronization using echo state network. (arXiv:2110.05139v2 [q-bio.NC] UPDATED)
- Biologically Plausible Training Mechanisms for Self-Supervised Learning in Deep Networks. (arXiv:2109.15089v3 [cs.NE] UPDATED)
- Controlled Comparison of Simulated Hemodynamics across Tricuspid and Bicuspid Aortic Valves. (arXiv:2109.08261v2 [q-bio.TO] UPDATED)
- Low case numbers enable long-term stable pandemic control without lockdowns. (arXiv:2011.11413v5 [q-bio.PE] UPDATED)
- Altered structural balance of resting-state networks in autism. (arXiv:2010.09441v3 [q-bio.NC] UPDATED)
- Predictive models of RNA degradation through dual crowdsourcing. (arXiv:2110.07531v1 [stat.ML])
- Glucose uptake in mammalian cells measured by ICP-MS
- Phosphatases are predicted to govern prolactin-mediated JAK-STAT signaling in pancreatic beta cells
- Benchmarking imputation methods for network inference using a novel method of synthetic scRNA-seq data generation
- Impact of Variability in Cell Cycle Periodicity on Cell Population Dynamics
- Requirements for mammalian promoters to decode transcription factor dynamics
- Architect: a tool for producing high-quality metabolic models through improved enzyme annotation
- Topological Constraints on Noise Propagation in Gene Regulatory Networks
- Dynamic metabolic network modeling of a mammalian cell cycle using time-course multi-omics data
- Reverse engineering of metacognition
- A theoretical framework for proteome-scale single-molecule protein identification using multi-affinity protein binding reagents
- Effectiveness of the BNT162b2 (Pfizer-BioNTech) and the ChAdOx1 nCoV-19 (Oxford-AstraZeneca) vaccines for reducing susceptibility to infection with the Delta variant(B.1.617.2) of SARS-CoV-2
- Genetic evidence supports the development of SLC26A9 targeting therapies for the treatment of lung disease
- Vaccine effectiveness against SARS-CoV-2 transmission to household contacts during dominanceof Delta variant (B.1.617.2), August-September 2021, the Netherlands
- Differentiation of SARS-CoV-2 naturally infected and vaccinated individuals in an inner-city emergency department
- Mechanism of optimal time-course COVID-19 vaccine prioritization based on non-Markovian steady-state prediction
- A molecular surveillance-guided vector control response to concurrent dengue and West Nile virus outbreaks in a COVID-19 hotspot of Florida
- High risk of SARS-CoV-2 infection among frontline healthcare workers in Northeast Brazil: a respondent-driven sampling approach
- Genetically determined serum testosterone level and Covid-19 illness level: A mendelian randomization study
- Covid-19 Epidemic Prediction in France: the Multimodal Case.
- Impact of the COVID-19 pandemic on mental healthcare consultations among children and adolescents in Norway: a nationwide registry study
- Long-term stability predictions of therapeutic monoclonal antibodies in solution using Arrhenius-based kinetics
- Deforestation is the turning point for the spreading of a weedy epiphyte: an IBM approach
- Epidemiological and economic impact of COVID-19 in the US
- Interactions between nascent proteins and the ribosome surface inhibit co-translational folding
- Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning
- Path to improving the life cycle and quality of genome-scale models of metabolism
- Evaluation of Le et al.: Challenges and opportunities for using data to understand equitability in science
- Analysis of scientific society honors reveals disparities
- Deep computational analysis details dysregulation of eukaryotic translation initiation complex eIF4F in human cancers
- Efficient retroelement-mediated DNA writing in bacteria
- Multiparameter persistent homology landscapes identify immune cell spatial patterns in tumors [Biophysics and Computational Biology]
- Switchover phenomenon induced by epidemic seeding on geometric networks [Applied Mathematics]
- Teaching machines to anticipate catastrophes [Ecology]
- The discrete-time Kermack-McKendrick model: A versatile and computationally attractive framework for modeling epidemics [Applied Mathematics]
- Deep learning for early warning signals of tipping points [Applied Mathematics]
- A data-driven method to learn a jump diffusion process from aggregate biological gene expression data
- Network models to evaluate vaccine strategies towards herd immunity in COVID-19
- Robust p53 Recovery Using Chattering Free Sliding Mode Control and a Gain-Scheduled Modified Utkin Observer
- Resolving Conflict Over Within-Pair Mating Rate in External Fertilizers
- Peripheral structures in unlabelled trees and the accumulation of subgenomes in the evolution of polyploids
- Measuring tree balance using symmetry nodes — A new balance index and its extremal properties
- Dynamics of partially mitigated multi-phasic epidemics at low susceptible depletion: phases of COVID-19 control in Italy as case study
- Mathematical modeling and analysis of the heat shock protein response during thermal stress in fish and HeLa cells
- A simple derivation of the mean of the Sackin index of tree balance under the uniform model on rooted binary labeled trees
- Moving-habitat models: A numerical approach
- Visual perception of texture regularity: Conjoint measurements and a wavelet response-distribution model
- State transitions through inhibitory interneurons in a cortical network model
- On testing structural identifiability by a simple scaling method: Relying on scaling symmetries can be misleading
- Interplay between mobility, multi-seeding and lockdowns shapes COVID-19 local impact
- Universal risk phenotype of US counties for flu-like transmission to improve county-specific COVID-19 incidence forecasts
- The Impact of Contact Structure and Mixing on Control Measures and Disease-Induced Herd Immunity in Epidemic Models: A Mean-Field Model Perspective
- Modeling and Research on an Immuno-Epidemiological Coupled System with Coinfection
- Modeling the Pancreatic Cancer Microenvironment in Search of Control Targets
- Spreading Properties for SIR Models on Homogeneous Trees
- Impulsive Fire Disturbance in a Savanna Model: Tree–Grass Coexistence States, Multiple Stable System States, and Resilience
- The effect of men who have sex with men (MSM) on the spread of sexually transmitted infections
- Assessing countermeasures during a hepatitis A virus outbreak among men who have sex with men
- Analysis of international traveler mobility patterns in Tokyo to identify geographic foci of dengue fever risk
- On the relationship between inhibition and receptor occupancy by nondepolarizing neuromuscular blocking drugs
- Markov modelling of viral load adjusting for CD4 orthogonal variable and multivariate conditional autoregressive mapping of the HIV immunological outcomes among ART patients in Zimbabwe
- Performance Assessment of the Network Reconstruction Approaches on Various Interactomes
- Conformational Characterization of the Co-Activator Binding Site Revealed the Mechanism to Achieve the Bioactive State of FXR
- Fuzzle 2.0: Ligand Binding in Natural Protein Building Blocks
- Molecular Dynamics Simulations Reveal the Interaction Fingerprint of Remdesivir Triphosphate Pivotal in Allosteric Regulation of SARS-CoV-2 RdRp
- Packpred: Predicting the Functional Effect of Missense Mutations
- The crucial role of model systems in understanding the complexity of cell signaling in human neurocristopathies
- Transferability of tigecycline resistance: Characterization of the expanding Tet(X) family
- Orexin, serotonin, and energy balance
- An integrative multiscale view of early cardiac looping
- Lineage‐instructive functions of the E26‐transformation‐specific‐family transcription factor Spi‐C in immune cell development and disease
- Approaches for completing metabolic networks through metabolite damage and repair discovery
- Inferring better gene regulation networks from single-cell data
- Understanding circadian regulation of mammalian cell function, protein homeostasis, and metabolism
- The pentose phosphate pathway and organization of metabolic networks enabling growth programs
- Data integration in logic-based models of biological mechanisms
- Differential equation model for central-place foragers with memory: implications for bumble bee crop pollination
- Incorporating carbon dioxide into a stoichiometric producer–grazer model
- Solving the chemical master equation for monomolecular reaction systems and beyond: a Doi-Peliti path integral view
- Theoretical modeling of collaterally sensitive drug cycles: shaping heterogeneity to allow adaptive therapy
- Effectiveness of isolation measures with app support to contain COVID-19 epidemics: a parametric approach
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