Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Removing Timing Shortcuts Improves Non-Invasive Brain-to-Text
- Computing Extinction Barriers in a Quorum-Sensing Reaction Network
- Computational Insights into Mechanostability and Dissociation Dynamics of the Dengue Virus Envelope Protein Ectodomain Dimer Across pH and Temperature Gradients
- Not all solutions are created equal: An analytical dissociation of functional and representational similarity in deep linear neural networks
- Ancestral lineages under horizontal trait transfer: spinal decomposition and time reversal beyond stationarity
- ProtScape: A molecular structure and energy-aware representation for protein conformation generation
- Reward Valuation in Large Language Models: Causal Induction of Anhedonia
- Belief-Based Maximum Occupancy Principle and Active Inference
- Fluctuating growth rate and spatial diffusion shape plankton diversity
- Association profile conditioning in a set-temporal transformer for cross-session intracortical motor decoding
- Dynamical stability and accuracy of moment closure approximations for bursty gene expression with nonlinear degradation
- From seven combination hypotheses to one testable interaction: a gated agentic AI QSP workflow applied to healthy ageing interventions
- A Reduced Mechanistic Model for Aquatic Decomposition of a Human Body
- Reducing growth-medium complexity reveals nutrient-responsive programs in a near-minimal bacterium
- Cyclic uremia without kidney injury drives cardiovascular disease with rapid onset of immunosenescence and heart failure
- A mechanistic, mortality-referenced biological age from routine blood tests: construction and temporal validation of IQN-BIOAGE-01
- Stress-recovery dynamics reveal a separatrix in transcriptomic landscapes across organs and aging
- The Metabolic Organ Clock: A Computable Framework Linking Cell-Lineage Architecture to Emergent Organ Bioenergetics
- Interpretable machine learning coupled to gene regulatory networks uncovers subcircuits underlying cell fate decisions
- Integrative proteomic analysis and molecular dynamics simulations of ANKLE2 reveal mechanisms of microcephaly
- Age-Stratified Patterns of Diagnostic Delay in Pertussis
- Potential impact of changes in influenza vaccination coverage and effectiveness on pediatric influenza burden in the United States, 2022/23-2024/25
- Occupational endotoxin exposure, DNA methylation changes, and immune-cell remodeling: an epigenome-wide association study in two cohorts
- Triangulating population, individual, and genetic evidence for priority setting in structurally heterogeneous blocs: metabolic risk factors for stroke in the Shanghai Cooperation Organisation
- Methylation-associated Gene Expression (MaGE): a non-invasive, in vivo measure of cellular senescence.
- Design and outcome-model estimability in doubly robust survival analysis: a breast cancer reanalysis
- Increasing risks of recurrence following community-associated Clostridioides difficile infection in Oxfordshire 2000-2025
- Modelling the influence of the duration of effectiveness and time taken to implement vector control interventions for vector-borne diseases.
- Comparing epigenetic puberty and epigenetic clocks as biomarkers of adult biological aging and health
- Endometriosis and Cardiovascular Disease Across Levels of Systemic Inflammation: A Cross-Sectional Study of NHANES 1999-2006
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- Mathematical discovery and exploration can be done at scale
- Mantis: A foundation model for mechanistic disease forecasting
- Large-scale semidefinite programming with graphics processing units
- Network topology creates independent control of multiple checkpoints in the cell cycle system
- Messaging strategies and the emergence of echo chambers in collective decision-making
- Utility-driven cooperation and emergent group diversity in the N-player Stag Hunt game: A framework relevant to collective biological behavior
- From neural propagation to conscious experience: A geometro-diffusion theory of consciousness
- Stochastic dynamics of an epidemic-behavior model
- Pillars of theoretical biology: Superspreading and the effect of individual variation on disease emergence
- Successful strategies in the voluntarily repeated Prisoner’s Dilemma
- Revisiting Fulvestrant Dosing: Biomarker-Driven Mathematical PK/PD Modeling and Dosing Optimization in Estrogen Receptor–Positive Breast Cancer
- Trade-off between Allee remediation and disease transmission for adaptive survival: A mathematical model on Allee-exposed species
- Scalable branch-and-bound model selection with non-monotonic criteria including AIC, BIC and Mallows’s Cp
- Optimal control of dengue under vaccine heterogeneity: From dynamical analysis to dynamic strategy optimization
- Transition-pair structure and near-extremal third-position transition robustness in the standard genetic code
- Demographic changes and behavioural responses shape vulnerability to infectious disease outbreaks
- Effects of spatial constraints of inhibitory connectivity on the dynamical development of criticality in spiking networks
- GeoEPred: A multimodal structure-aware geometric deep learning framework for Gram-negative bacterial secreted effector prediction with sequence semantics
- PEtab Select: Specification standard and supporting software for automated model selection
- Context-dependent feature modulation shapes human decision policies in approach–avoidance conflicts
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- Next-generation metabolic models: From multi-constraint integration to AI-driven whole-cell kinetic simulation
- Unleashing the potential of whole-cell modelling one step at a time
- The evolution of standards in systems biology: From metabolic and multi-scale to whole-cell models
- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
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