Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
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- Age-related dynamics of DNA co-methylation modules in humans
- Metabolic-Epigenetic Coupling in Cellular Senescence: In Silico Cristae Remodeling Depletes Alpha-Ketoglutarate to Drive KDM4/6 Inhibition and SASP Amplification
- Joint inference of paired dynamical gene regulatory networks reveals distinct cell-state landscapes of neutrophil reprogramming
- Threonine Supplementation Reduces Methylglyoxal Overflow by Increasing Glycolysis Flux at the Payoff Phase: A Metabolic Modeling Analysis
- Integration of a smooth mesh-based contact pressure model into tracking and predictive simulations
- Cell cycle exit is required for differentiation and cell fate diversification but not neoblast specialisation in planarians
- Beyond Steady-State Adaptation: Evaluating the Dynamic Performance of Biological Feedback Control
- Interpretable spherical geometry of single-cell state transitions from dominant principal components
- Newly identified COPD GWAS protein interactors reveal a potential disease network module
- KSTAR v1.2: A faster and more and accessible KSTAR for kinase activity inference
- Environmental Drivers and Spatial Patterns of Lassa Fever Cases in Nigeria: A GIS-Based Approach to Dynamic Susceptibility Mapping
- When CKM Syndrome Stage Is Not a Severity Scale: Audiometric Hearing Thresholds in Older U.S. Adults
- Sickle Cell Disease Care in Jamaica: Enablers and Barriers to Healthcare Access and Hydroxyurea Utilization
- Global immuno-epidemiology and the persistence of mpox clade IIb in MSM
- The public health value of wastewater surveillance for viruses with pandemic potential: a modelling study
- Selection bias in Mendelian randomization studies with adjustment for medication use
- Rotating Night Shift Work and Risk of Incident Cardiovascular Disease and Mortality by Chronotype: A Prospective Cohort Study in Nurses' Health Study II
- Psychological factors contribute more to chronic low back pain than spine pathology: An LLM-based analysis of radiology reports
- Real-World Effectiveness of Maternal RSVpreF Vaccination and Durability of Infant Protection
- Multidomain residential external exposome and epigenetic ageing in the UK general population
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- Mapping the combinatorial coding between olfactory receptors and perception with deep learning
- Multiobjective learning and design of bacteriophage specificity
- Synthetic tissue ecology: Ecological control of developmental self-organization across scales
- A diversified consortium of engineered biosensors enables multi-target quantification
- Interpretable biophysical neural networks of transcriptional activation domains separate roles of protein abundance and coactivator binding
- Correction for Zhang et al., Reconstructing the early spatial spread of pandemic respiratory viruses in the United States
- Uncovering dynamic human brain phase coherence networks
- Stochasticity and probabilistic trajectory scoring are essential for data-driven closures of chaotic systems
- Group size effects and collective misalignment in LLM multi-agent systems
- Modeling infodemics on a global scale: A 30 countries study using epidemiological and social listening data
- Emergence of curvature-dependent tissue growth from cell crowding and mechanical interactions
- A theoretical model for optimal fluid maintenance in clinical dengue patients
- Mechanisms accounting for Allee effects during HIV-1 infection
- Bridging two theoretical frameworks of autocatalysis: RAF sets and stoichiometric autocatalysis
- A stochastic agent-based model for naive CD8+ T cell recirculation dynamics in mice
- Use of topological data analysis for the detection of phenomenological bifurcations in stochastic epidemiological models
- Stochastic analysis of temporal tumor evolution with macrophage effects
- Mathematical modeling of age-structured viral infections: Integrating virus-to-cell and direct cell transmission
- Thresholds for stochastic SIRS with switching exponents
- Modeling tumor-immune interactions with hyper-allee effects: Formulation, stability, and bifurcation analysis
- Integrative AI-assisted modeling suggests CPPF binding at a composite α/β-tubulin interface pocket dominated by β-tubulin contacts
- Domain classification of archaeal proteomes reveals conserved fold repertoire
- Balanced contractility and adhesion drive polarization in a minimal elastic actomyosin network
- Response to comment on “Using genomic data and machine learning to predict antibiotic resistance: A tutorial paper”
- Data-driven modeling of spatiotemporal dynamics using multimodal imaging data
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- The evolution of standards in systems biology: From metabolic and multi-scale to whole-cell models
- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- Amniote gastrulation in silico
- A dialog between cell adhesion and topology at the core of morphogenesis
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