Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
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- A unified framework for causal gene regulatory network inference grounded in orthogonal molecular evidence
- A transcriptional patient map of systemic lupus erythematosus reveals disease-related multicellular immune programs conserved between blood and kidney
- A low-dimensional transcriptional code enables decoding of BMP/TGFβ signaling from single-cell transcriptomes
- Aging Rhesus Macaque show tissue and sex-specific balance of drifting and coordinated miRNA programs
- DrugPTM-Bench: A Large-Scale Dataset for Predictive Modeling of Drug-Induced Cell Type-Specific Protein Post-Translational Modifications
- Bidirectional network hubs: NT-genes as optimal targets for partial cancer reversal
- Adult regenerative defects arise from discordant scaling of signal dependent growth and patterning
- MatriSpace: Identification and visualization of spatially resolved ECM gene expression patterns in health and disease
- Asymmetric drug effects drive near-extinction cancer cell oscillations in transgenic oncolytic virotherapy: A modelling study
- Data-driven lifespan transitions: cortical morphometry and intrinsic differences across network scales
- Frequency and Medical Costs of Hypersensitivity- and Anaphylaxis-Related Adverse Events for Different Intravenous Iron Products Using the US Food and Drug Administration Adverse Event Reporting System (FAERS)
- Early-life dentine based elemental biodynamics and cord blood telomere length
- Early-Life Sugar Restriction, Multi-omics Architecture, and Multisystem Resilience: A Natural Experiment
- Impact Of Maternal Education on Perinatal Outcomes in Delta State, Nigeria
- Unmasking Disparities in Caesarean Section Utilization in Nigeria: A K-Means Cluster Analysis of Obstetric Risk Profiles Using Machine Learning Approach
- Analytic Choices Shape Genomic Risk Estimates from Electronic Health Records: Coronary Heart Disease in eMERGE IV
- Whom Does Algorithmic Risk Stratification Miss? A Fairness Audit of Machine Learning Targeting for Concurrent Maternal-Child Double Burden of Malnutrition Across 30 Low- and Middle-Income Countries
- Molecular Detection and High-Frequency Horizontal Gene Transfer of ESBL Genotype from Proteus Species to Escherichia coli: Implications for the Spread of WHO Priority Pathogens in North-Eastern Nigeria
- Burden of Syphilis and STI Co-infections in Ghanaian Pregnant Women: Implications for Antenatal Screening Policy
- Changing COVID-19 vaccine eligibility could reshape disease burden for all
- DeepSeMS: revealing the hidden biosynthetic potential of the global ocean microbiome with a large language model
- Digital twins and digital models of the human circulatory system
- Tracing the rise of biomedical foundation models
- MechFind: a computational framework for de novo prediction of enzyme mechanisms
- eSIG-Net: an interaction language model that decodes the protein code of single mutations
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- Stable flapping flight in morphological space: Model, simulation, and explicit stability criteria
- Novel Knotted Solenoid fold with order-shifted coil arrangement leads to nontrivial 31 topology
- A parallel algorithm for the computation of the Jones polynomial
- Sparse identification of nonlinear dynamics and Koopman operators with Shallow Recurrent Decoder Networks
- Deep learning framework for quantifying self-organization in Myxococcus xanthus
- The role of antibody-mediated immunity in shaping the seasonality of respiratory viruses
- Theoretical origins of extreme cell differentiation irreversibility in volvocine algae: A dynamic model of organismal size effects
- An analytically tractable framework for transcription–extrusion coupling in chromatin loop formation
- How do foragers use nonlocal information? A novel modeling framework
- Model reduction and analysis: A case study of a malaria control model
- Parameterisation of epidemiological models from small field experiments: A case study of banana bunchy top virus transmission
- A sharp dichotomy for Wolbachia invasion: Critical release thresholds and global stability
- The basic reproduction rate for epidemic models structured by chronological age and infection age
- Optimal control of inter-population disease spread via reaction-diffusion models
- Mathematical modeling of neural stem cell migration within brain using multi-fiber tractography
- Complexity of resting cortical activity predicts neurophysiological responses to theta-burst stimulation but fails to generalize: A rigorous machine-learning approach
- Learning the bistable cortical dynamics of the sleep-onset period
- Evaluating the utility of amino acid similarity-aware kmers to represent TCR repertoires for classification
- Evolutionary Kuramoto dynamics unravels origins of chimera states in neural populations
- Cell type annotation for scATAC-seq via DNA large language model and graph domain adaptation
- Observer-Based Source Localization in Tree Infection Networks via Laplace Transforms
- Analysis of the Modulation of RAF Signaling by 14-3-3 Proteins
- Statistical and Structural Bias in Birth-Death Models
- Stochastic Analysis of Taxis and Kinesis Properties of Colonial Protozoa
- A Mathematical Model for Smooth Muscle Cell Phenotype Switching In Atherosclerotic Plaque
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- Primer: Drug discovery and patient-derived organoids
- Complex versus complicated systems biology, universality versus detailed modeling
- Simple systems, complex dynamics: Lessons from minimal gene regulatory networks
- Toward a systems view of life’s origins: Modeling the emergence of complexity across chemical, informational and ecological levels
- Intercellular coupling and synchronization of circadian clocks: Theoretical insights and experimental perspectives
- Why is it easier to predict the epidemic curve than to reconstruct the underlying contact network?
- Unravelling the spatiotemporal dynamics of amyloid-$$\beta $$–induced astrocyte–neuron network model in Alzheimer’s disease
- Stability and Self-Organized Patterns in Coupled Ecohydrological–Fire Dynamics: A Model of Vegetation–Rainfall–Bushfire Interactions
- Threshold dynamics of a HBV infection model with degenerate diffusion, DNA-containing capsids and time-delays in heterogeneous environment
- On learning functions over biological sequence space: relating Gaussian process priors, regularization, and gauge fixing