Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Training a force field for proteins and small molecules from scratch
- A Machine Learning Benchmarking Framework for Lipid Nanoparticle Transfection Efficiency Prediction
- TRAECR: A Tool for Preprocessing Positron Emission Tomography Imaging for Statistical Modeling
- Learning Mechanistic Reasoning for Chemical Reactions with Large Language Models
- Infectious Disease Induces Emergent Oscillations, Extinction and Changes in Community Persistence in a Food Chain
- Higher-Order Hit-&-Run Samplers for Linearly Constrained Densities
- Structural identifiability of partially-observed stochastic processes: from single-particle trajectories to total particle density data
- Topology-Informed Survival Analysis of Breast Cancer Patients Using the Mapper Algorithm
- A model with exposure in the epidemiological sense. Part 1 -- Base model
- Thoughtseeds as Latent Causes: A Dual-Process Computational Phenomenology of Focused-Attention Meditation
- Coupled Cell-Intrinsic and Microenvironmental Heterogeneity Drives Divergent Trajectories in Castration-Resistant Prostate Cancer
- Deep Visual Proteomics links vascular smooth muscle cell phenotypes to atherosclerotic plaque stability
- Textural features for pathway-level representation of omics data in biological networks
- Large-scale, interpretable gene regulatory network inference through biologically informed matrix factorization
- Predicting the protein interaction landscape of a mycobacterial pathogen
- Axolotl regeneration reveals a dormant cis-regulatory grammar conserved across vertebrate genomes
- Gene Regulatory Networks that support Multi-Fate Cellular Decisions
- Beta-adrenergic receptor activation during stress reduces the abundance of commensal Clostridia in the mouse gut
- Diversity in transcriptomics without cell types
- Large-scale analysis of optimisation methods for parameter estimation problems in the life sciences
- Bridging surveillance gaps in dengue: a hierarchical model integrating mixed data sources for transmission estimation and vaccine targeting
- Making inferences with incomplete epidemiological data: a proof-of-concept estimating measles vaccine coverage across Canada
- A decision analytic framework for triggering cholera outbreak response based on early-case surveillance
- Prevalence of Meningitis and Pneumonia among Neonates Treated at Public Hospitals in Ethiopia: A Systematic Review and Meta-Analysis
- Evidence for a detection ceiling in the 2026 Bundibugyo virus disease epidemic in the Democratic Republic of the Congo: an analysis of publicly reported aggregate surveillance data
- Genetic sensitivity analysis: estimating genetic confounding and environmentally mediated genetic effects using multiple exposures
- Efficient stochastic epidemic simulation via the Sellke construction
- Implementation of a standardized Video-based Asynchronous Neurological Examination (VANE) in a multi-center observational study of Alzheimer's disease (AD) and AD related dementias
- How bursty infectiousness shapes epidemic dynamics
- Mathematical Modeling of Rift Valley Fever in the Sahelian Zone
- An enzyme-specific protein language model for catalytic property prediction
- Enhanced fuzzy joint mutual information with Cuckoo Search Algorithm and genetic algorithm for diagnostics of chronic kidney disease prediction
- Label-free segmentation of mitochondria for simultaneous morphological and metabolic studies
- Context-aware sequence-to-function model of human gene regulation
- The challenge and promise of studying human antigen-specific T cells
- RIG-Ing the system to balance immune activation and inflammatory tissue damage in the airways
- Programmable regenerative tissues: Converging mammalian synthetic biology and tissue engineering
- The molecular landscape of cellular metal ion biology
- BulkFormer: A large-scale foundation model for bulk transcriptomes
- Quantitative cytokine profiling of primary human macrophages reveals distinct single-cell modes of trained immunity
- Daring few, patient many: Division of labor in decentralized foraging collectives
- Modeling framework to demonstrate elimination of a vector population: Tsetse elimination in Chad
- Spatial and temporal prediction of Aedes aegypti populations with atmospheric and urban forms dependence
- Mathematical modeling of JAK2V617F clonal expansion in a general population cohort
- Correction for Zhang et al., Deep learning framework for quantifying self-organization in Myxococcus xanthus
- Evolution of quantitative traits: Exploring the ecological, social and genetic bases of adaptive polymorphism
- Directed cell migration from protrusion-adhesion coupling under local chemotactic regulation
- Integrated tick management strategies in fragmented peridomestic environments
- The male-biased sex ratio in humans and its role in the transition from promiscuity to pair bonding
- Quantifying the counter-intuitive effects of vaccination by coupling the transmission dynamics of COVID-19 and the evolution of human behaviors
- Seasonal impacts on brucellosis transmission mediated by live sheep supply-demand dynamics
- A delay differential model for antiviral treatment and rebound dynamics
- Adding a fecundity-survival trade-off to a discrete population model with maturation delay
- Optimal melanoma treatment protocols: A bilinear control model
- Distributed majority consensus in synthetic microbial consortia with bursty gene expression
- Molecular surveillance of multiplicity of infection, haplotype frequencies, and prevalence in infectious diseases
- HNPP: Higher-order network-based personalized PageRank for detecting critical phase in complex biological systems
- PumpKin: A machine-learning pipeline for automatically tracking localized kinematics in freely moving C. elegans
- Targeting stiffness-dependent YAP/TAZ restores angiogenesis dynamics impaired by ALK1 knockout in silico
- Accounting for Defective Viral Genomes in viral consensus genome reconstruction, application to influenza virus
- Stability and Robustness of a Generalized Pump-Leak Model for Epithelial Vesicles
- Personalized Spatiotemporal Radiotherapy for GBM: A PDE-Constrained Optimization Study
- Global Stability Analysis of a Mathematical Model for the “Shock-and-Kill" Strategy in HIV-1/SIV Brain Infection
- Phylogenetic Network Models as Graphical Models
- Mathematical Modeling Shows that Overall Infection Burden is Reduced More by Vaccines that Decrease Spread or Accelerate Recovery than those that Lower Severe Infections or Death
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- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- A dialog between cell adhesion and topology at the core of morphogenesis
- Computational models of cellular bioenergetics indicate the role of Ca2+-regulated pyruvate dehydrogenase in metabolic remodeling
- Dynamics of cell fate patterning in discrete multicellular systems
- Hyper-exponential growth in an epidemic model: some explicit solutions and their significance
- Global dynamics of a spatially heterogeneous diffusive two-strain epidemic model with varying total population
- Exploring the evolution of maturation time via strong competition model with stage structure
- A reaction telegraph model reveals synergy between motility strategies in Myxococcus xanthus predation
- Dynamical analysis of a stochastic dual-strain infectious model with hospital beds and logarithmic Ornstein-Uhlenbeck process