Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Coherence in the brain unfolds across separable temporal regimes
- Neuronal Spike Trains as Functional-Analytic Distributions: Representation, Analysis, and Significance
- A generative model for bipartite gene-sharing networks
- Emergent frequency-dependent selection predicts mutation outcomes in complex ecological communities
- Multi-Wavelength Machine Learning for High-Precision Colorimetric Sensing
- The Physics of Causation
- Modeling of Self-sustained Neuron Population without External Stimulus
- Generation time in a discrete epidemic model with asymptomatic carriers: beyond geometric waiting times
- What good is modeling? Introducing biology students to theory
- From Brain Models to Executable Digital Twins: Execution Semantics and Neuro-Neuromorphic Systems
- NovoGlyco: mapping protein glycosylation in prokaryotes
- EML4-ALK Fusion Rewires Transcriptomic, miRNA, and CAF-Associated Programs in Non-Small Cell Lung Cancer
- Opto-MDMi: a dual-lock optogenetic system for robust activation of endogenous p53
- iCNG99: a validated genome-scale metabolic model of Cryptococcus neoformans strain H99
- Targeting HIV at its core: A mathematical model for optimizing Tat Inhibitor-based therapies toward enhanced functional cure strategies
- Gene Expression Variability with Feedback Regulation Implemented via Protein-Dependent Cell Growth
- Tracing cell communication programs across conditions at single cell resolution with CCC-RISE
- Deep quantitative phosphoproteomics identifies non-canonical pH-sensitive yeast phosphorylation networks
- Hyperbolic stratification of protein intrinsic disorder and structure-mediated interactions in the human protein interactome
- Equation-Based Integration of Flux Balance Analysis with Diffusion for Spatio-Temporal Simulation of Microbial Communities
- Novel risk models based on screening history results and timing of lung cancer diagnosis: Post hoc analysis of the National Lung Cancer Screening Trial
- Prioritising determinants of systemic inflammation across molecular, physiological and disease phenotypes.
- A multidomain intrinsic capacity score tracks longitudinal health trajectories in the UK Biobank
- SARS-CoV-2 Introductions into Lao PDR Revealed by Genomic Surveillance, 2021-2024
- Why Invariant Risk Minimization Fails on TabularData: A Gradient Variance Solution
- GPS Mobility Tracking, Ecological Momentary Assessment, and Qualitative Interviewing to Specify How Space Produces Intersectional Health Inequities: Development and Pilot Testing of the Spatial Intersectionality Health Framework (SIHF) and IGEMA Methodology
- Noisy periodicity in tropical respiratory disease dynamics
- Sexual risk behaviours following medical male circumcision: a matched pseudo-cohort analysis using population-based survey data
- Effect of a sanitation intervention on the nutritional status of children in Maputo, Mozambique: a controlled before-and-after trial
- Recombinant zoster vaccination in patients with dementia is associated with improved survival and better cognitive preservation
- SpatialCOC: an integrative framework for spatial continuous mapping and cross-omics correction in spatial multi-omics data
- Meta-encoder: a unified integration framework for multiple pathological foundation models in cancer detection
- KIMMDY: a biomolecular reaction emulator
- Phenotypic prediction of missense variants via deep contrastive learning
- The optimization of neuroprosthetic interfaces relying on biophysical and surrogate digital twins
- Engineering sensor-based antithetic integral controllers for enhanced dynamic performance and noise attenuation
- The impact of package selection and versioning on single-cell RNA-seq analysis
- NOT-gated chimeric antigen receptor circuits in T and NK cells
- Constructing a holistic map of cell fate decision by hyper solution landscape
- Systemic rhythmicity of host and bacterial bile acid amidates in the mouse
- Deep learning framework for quantifying self-organization in Myxococcus xanthus
- Fast automated adjoints for spectral PDE solvers
- Tracing the origin of tropical North Atlantic Sargassum blooms to West Africa
- A swarm intelligence approach to density function reconstruction from moments using entropy optimization
- Fitting coarse-grained models to macroscopic experimental data via automatic differentiation
- Adaptive Dynamics models for the evolution of class-structured populations in stable systems
- Impacts of hunting cooperation among predators on predator-prey dynamics
- Modelling cancer cell dormancy in mice: Heavy-tailed distributions and the role of cancer cell death in reactivation times
- Synergy between CO2 and water activity in subaerial biofilms in varying environments
- Quantifying the effect of threshold-triggered interventions on hepatitis E virus outbreaks
- Persistence for a class of nonautonomous systems of differential equations with unbounded delays
- How mathematical forms of chemotherapy and radiotherapy bias model-optimized predictions: Implications for model selection
- Investigating the impact of adipose derived media on ovarian cancer: Insights from a 3D in-silico model
- How generalist predation shapes a predator-prey model: A bifurcation analysis
- Oncolytic viral therapy under type I interferon regulation: Mathematical modeling and analysis
- How the visual brain can learn to parse images using a multiscale, incremental grouping process
- How muscle ageing affects rapid goal-directed movement: mechanistic insights from a simple model
- On the role of L-type Ca2+ and BK channels in a biophysical model of cartwheel interneurons
- Unveiling gene perturbation effects through gene regulatory networks inference from single-cell transcriptomic data
- Forecastability of infectious disease time series: are some seasons and pathogens intrinsically more difficult to forecast?
- Stochastic Analysis of Taxis and Kinesis Properties of Colonial Protozoa
- A Mathematical Model for Smooth Muscle Cell Phenotype Switching In Atherosclerotic Plaque
- Macrophage Polarization Determines Inflammation Amplification and Resolution
- Vascular-Coupled Modeling of Treatment Resistance in Tyrosine Kinase Inhibitor Therapy: Parameter Estimation and Phase-Dependent Sensitivity Analysis
- Revisiting Turing’s Chemical Basis of Morphogenesis
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- Primer: Drug discovery and patient-derived organoids
- Simple systems, complex dynamics: Lessons from minimal gene regulatory networks
- Toward a systems view of life’s origins: Modeling the emergence of complexity across chemical, informational and ecological levels
- Intercellular coupling and synchronization of circadian clocks: Theoretical insights and experimental perspectives
- Carleman-linearized epidemic models as a route to a data-driven algebraic estimate of the effective reproduction number
- The role of multiscale and delayed dynamics in tuberculosis Transmission and control: a mathematical approach
- Age-structured mechanical models for tumor growth
- Dynamics and suppression paradox of a stage-structured model for mosquito control
- Predator-prey system with a boundary-upstream protection zone in open advective environments
- Insights into Dengue fever dynamics through advanced mathematical modeling and simulation