Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- QHap: Quantum-Inspired Haplotype Phasing
- The Modeler Schema Theory of Consciousness, with a Falsifiable Experiment
- Classification of SARS-CoV-2 Variants through The Epistatical Circos Plots with Convolutional Neural Networks
- n:m Phase-Locking of Coupled Oscillators with Nonlinearities in Coupling Strength and Heterogeneity
- 8 quick tips for data-model integration in ecology
- CTM-AI: A Blueprint for General AI Inspired by a Model of Consciousness
- Curated AI beats frontier LLMs at pharma asset discovery
- A foundation model of vision, audition, and language for in-silico neuroscience
- Genotype specificity and spatial arrangement govern the direction and magnitude of selection in variable environments
- Neural Manifolds as Crystallized Embeddings: A Synthesis of the Free Energy Principle, Generalized Synchronization, and Hebbian Plasticity
- Bion-M 2 Biosatellite: Multisystem Mouse Responses to 30 Days in High-Latitude Orbit as a Deep-Space Analog
- REDUCED-PRECISION STOCHASTIC SIMULATION FOR MATHEMATICAL BIOLOGY
- The first digital twin of Enterococcus faecium metabolism reproduces high-throughput phenotyping data
- Lineage-specific lncRNAs critically determine cross-species differences in tumors
- Box-Counting Fractal Dimensions of Cranial Suture: Effects of Measurement Conditions and Model-Based Reproduction of Fractal-Like Patterns
- Claim-Level Transparency Analysis of LLM-Generated Diagnostic Reports: A Metabolic and Endocrine Biomarker Study
- The Limits of Cross-Species WGCNA: Library Imbalance and Signal Dilution Constrain Effector Gene Recovery in Dual-Organism RNA-seq
- Network topology dictates sequential drug efficacy through bistability-mediated state switching
- Accessible Gibbs energy at metabolic activation limits long-term cell growth
- A Comprehensive Mathematical Model of Avidity in Cytokine Signaling
- Identifying the determinants of health protective behaviors during the COVID-19 pandemic using machine learning: an analysis of six countries
- Seroprevalence and Trends of Transfusion-Transmissible Infections Among Blood Donors in the Volta Region, Ghana: A Four-Year Retrospective Study
- Epigenetic age acceleration in offspring linked to paternal smoking initiation and overweight in puberty: Evidence from a two-generation study
- The "Involution" Penalty: Why Objective Wealth Fails to Protect Mental Health Without Subjective Status Perception in China
- Determinants of Adequate Antenatal Care Attendance in Nigeria: A Survey-Weighted Analysis of the 2018 Demographic and Health Survey
- Long-term within-person variation of routinely measured biomarkers are associated with mortality and cardiovascular health
- Modeling the impact of outbreak response immunization on typhoid fever using data from 19 outbreaks between 2000-2022.
- Frequent introductions and climate suitability drive increasing dengue risk in Florida
- Fecal Biomarkers to Characterize Intestinal Inflammation among Children with Medically Attended Diarrhea across Six Low-Resource Settings: Findings from the Enterics for Global Health (EFGH) Shigella Surveillance Study
- Prevalence and factors associated with tobacco and nicotine product use among adolescents in the Democratic Republic of the Congo: evidence from a cross-sectional national household survey
- Reusability report: Meta-learning for antigen-specific T cell receptor binder identification
- RegFormer: a single-cell foundation model powered by gene regulatory hierarchies
- Charting spatial ligand-target activity using Renoir
- Structural and dynamic studies uncover a distinct allosteric modulatory site at the µ-opioid receptor
- Inference of latent epidemic regimes and generative simulations reveal how inequality and mobility shape COVID-19 transmission
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- Stable flapping flight in morphological space: Model, simulation, and explicit stability criteria
- Novel Knotted Solenoid fold with order-shifted coil arrangement leads to nontrivial 31 topology
- A parallel algorithm for the computation of the Jones polynomial
- Sparse identification of nonlinear dynamics and Koopman operators with Shallow Recurrent Decoder Networks
- Deep learning framework for quantifying self-organization in Myxococcus xanthus
- The role of antibody-mediated immunity in shaping the seasonality of respiratory viruses
- Theoretical origins of extreme cell differentiation irreversibility in volvocine algae: A dynamic model of organismal size effects
- An analytically tractable framework for transcription–extrusion coupling in chromatin loop formation
- How do foragers use nonlocal information? A novel modeling framework
- Model reduction and analysis: A case study of a malaria control model
- A potential surrogate model for efficient inference of stochastic GLUT4 translocation
- When simple is enough: Binary models capture social complexity in coupled human-environment systems
- Parameterisation of epidemiological models from small field experiments: A case study of banana bunchy top virus transmission
- A sharp dichotomy for Wolbachia invasion: Critical release thresholds and global stability
- The basic reproduction rate for epidemic models structured by chronological age and infection age
- scHG: A supercell framework with high-order graph learning enables scalable multi-omics analysis
- AIEdit: Alignment-free genome assembly polisher trained on spaced seed match patterns
- Partial domain adaptation enables cross domain cell type annotation between scRNA-seq and snRNA-seq
- Exploring epidemic control policies using nonlinear programming and mathematical models
- Ten simple rules for an effective mentor–mentee writing partnership
- From Trait-Structured Within-Host Dynamics to SIR Models: A Multiscale Framework With Re-Exposure
- Observer-Based Source Localization in Tree Infection Networks via Laplace Transforms
- Analysis of the Modulation of RAF Signaling by 14-3-3 Proteins
- Statistical and Structural Bias in Birth-Death Models
- Stochastic Analysis of Taxis and Kinesis Properties of Colonial Protozoa
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- Primer: Drug discovery and patient-derived organoids
- Complex versus complicated systems biology, universality versus detailed modeling
- Simple systems, complex dynamics: Lessons from minimal gene regulatory networks
- Toward a systems view of life’s origins: Modeling the emergence of complexity across chemical, informational and ecological levels
- Intercellular coupling and synchronization of circadian clocks: Theoretical insights and experimental perspectives
- Why is it easier to predict the epidemic curve than to reconstruct the underlying contact network?
- Unravelling the spatiotemporal dynamics of amyloid-$$\beta $$–induced astrocyte–neuron network model in Alzheimer’s disease
- Stability and Self-Organized Patterns in Coupled Ecohydrological–Fire Dynamics: A Model of Vegetation–Rainfall–Bushfire Interactions
- Threshold dynamics of a HBV infection model with degenerate diffusion, DNA-containing capsids and time-delays in heterogeneous environment
- On learning functions over biological sequence space: relating Gaussian process priors, regularization, and gauge fixing