Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Gate-Based Feature Importance in Simulation-Based Inference for EEG: A Cautionary Tale
- Escaping the Phylogenetic Trap: Persistent Homology Enables Cross-Species Ion Channel Classification via Multimodal Graph Neural Networks
- Multiscale hemodynamics model for the pulmonary arteries, arterioles, capillaries, venules and veins
- Short-wave signal versus indirect prey-taxis
- A Formalizable Proof of the No-Supervenience Theorem: A Diagonal Limitation on the Viability of Physicalist Theories of Consciousness
- Lattice Brownian bees with cooperative reproduction: steady states, collapse, and spreading
- Generalized modeling reveals stabilizing mechanisms in cross-feeding microbial communities
- Behavioral Mapping of Hierarchical Dynamical Models Accelerates Bayesian Parameter Inference
- From Turing Patterns to Spike Self-Replication and Nucleation in a Growing-Domain Tulip Breaking Virus Model
- Music Between Two Minds: Individual Signatures, Shared States, and the Emergence of Creative Interaction
- Localis-REX: a general protocol for time-resolved spatiofunctional profiling in live cells and C. elegans
- Computational modeling of breast cancer metastases predicts response to dual checkpoint inhibition and reveals spatially-informed treatments
- SMAD3-driven cell state transitions underpin immunoresistance in bladder cancer
- An Efficient Implicit Tau-Leaping Method for Estimating Second-Order Sensitivities of Stiff Stochastic Biochemical Systems
- A statistical framework for system-level synthesis
- Cell State Transitions Drive Transcriptome-Proteome Alignment in a Minimal Photoautotroph
- Simulation-free approximate Bayesian computation for stochastic reaction networks
- Virtual lineages: in silico lineage tracing from single-cell and spatial transcriptomes
- Fitting and Selection of Within-Host Models for SARS-CoV-2 Infection
- Genome-scale metabolic models for a synthetic soil microbial community as a path for understanding community functioning
- Individual-ecological triangulation of risk factors for peripheral artery disease: concordant evidence for smoking and diabetes, discordant evidence for kidney disease
- PFAS Exposure During Pregnancy Is Associated with Shorter Gestational Age at Birth and with Growth Trajectories During the First 2 Years of Life
- Inequalities in self-rated health across European Union countries: a Simple-Means MAIHDA demonstration using the European Social Survey
- A multiscale mathematical model integrating viral load improves reconstruction of transmission chains and epidemiological parameters in household studies
- Choosing the spatial scale of aggregation in epidemic models: compression versus distortion
- A Clinical Atlas for Phenome-Wide Association Study of Obstructive Sleep Apnea Across Electronic Health Record Domains
- Association of Diet Quality and Physical Activity through Young Adulthood With Mid-Life Cardiovascular Health Trajectories: The Coronary Artery Risk Development in Young Adults (CARDIA) Study
- Are effects of drinking in pregnancy modified by ADH1B and ALDH2 genotype? A longitudinal analysis in the Norwegian Mother, Father and Child Cohort Study (MoBa)
- Biological age measured by DNA methylation clocks and mortality: A systematic review and meta-analysis
- SARS-CoV-2 infection detection efficiency in Denmark before major vaccine impacts
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- What is the future of genomic foundation models in biological research?
- CAR T cells from code to clinic: Framing modeling approaches with current translational research goals
- Sampling protein language models for functional protein design
- Let there be multifunctionality: Uncovering the dynamical zoo of the AC-DC genetic circuit
- High-throughput cell-free profiling of SARS-CoV-2 RBD variants enables rapid and quantitative in vitro affinity landscape mapping
- Learning dissipative chaotic dynamics with boundedness guarantees
- Taylor’s law beyond finite moments: A route to dynamic financial risk
- Generalized Taylor’s law for infinite-mean heavy-tailed data under dependence and heterogeneity
- Mathematical discovery and exploration can be done at scale
- Mantis: A foundation model for mechanistic disease forecasting
- Optimal scheduling of dengue vector control
- Stationary analysis of adaptive aspiration dynamics in graph-structured games
- Cultivation interruptions reduce fitness without consistently increasing phenotypic plasticity in an evolutionary reaction-norm model
- Life finds a way: Emergence of cooperative structures in adaptive threshold networks
- Dispersal asymmetry and dispersal distance shape dynamics and extinction risk in predator–prey metacommunities
- Coherent dynamical analysis arising from a stage-structured predator-prey model in a chemostat
- Parkinson’s disease, Gaucher disease, and bistability in the lysosomal degradation pathway
- Reaction-diffusion models of invasive tree pest spread: Quantifying the expansion of oak processionary moth in the UK
- Dynamics analysis of a delayed reaction-diffusion Filippov pest management model with double economic thresholds
- Linking osmotic laxative exposure to effective gut microbial dynamics: A treatment-dependent Lotka-Volterra analysis
- The evolutionary accessibility of cultural fitness landscapes
- Ten simple rules for responsible use of AI and LLMs in computational biology
- Cell-type dependence of effects from transcranial electric brain stimulation
- Environmental volatility is associated with adaptive caution in visual search
- Multiscale modeling reveals non-linear dynamics of AKT-mediated NO-ROS crosstalk in shear stress-induced endothelial phenotype
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- Next-generation metabolic models: From multi-constraint integration to AI-driven whole-cell kinetic simulation
- Unleashing the potential of whole-cell modelling one step at a time
- The evolution of standards in systems biology: From metabolic and multi-scale to whole-cell models
- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
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