Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Physics-Informed Symbolic Regression for Elasticity Modeling in Cardiac Digital Twins
- Multilevel genomic constraints shape nuclear tRNA gene organization in plants
- Hyper Input Convex Neural Networks for Shape Constrained Learning and Optimal Transport
- Stochastic dynamics at the back of a gene drive propagation wave
- The Curse of Black Sigatoka: A Backward Bifurcation Perspective
- Degree-dependent and distance-dependent contact rates interpolate between explosive, exponential and polynomial epidemic growth
- A Thermodynamic Analysis of Enhanced Metastability in Isochoric Supercooled Liquids
- Untrained CNNs Match Backpropagation at V1: A Systematic RSA Comparison of Four Learning Rules Against Human fMRI
- Theory of adhesion-driven self-organisation in growing tissues
- Observable Neural ODEs for Identifiable Causal Forecasting in Continuous Time
- Adult regenerative defects arise from discordant scaling of signal dependent growth and patterning
- MatriSpace: Identification and visualization of spatially resolved ECM gene expression patterns in health and disease
- Asymmetric drug effects drive near-extinction cancer cell oscillations in transgenic oncolytic virotherapy: A modelling study
- Data-driven lifespan transitions: cortical morphometry and intrinsic differences across network scales
- Proteome-aware organ proxy aging clocks
- A Minimal Regulatory Spatial Model for Emergent Multicellular Organization in Dissipative Environments
- Traveling Wave Analysis of a Go-or-Grow Invasion Model with ECM-Regulated Phenotypic Switching
- Impact of variability in cell generation times on cell-to-cell variability of protein concentrations
- Defining Cell Types through Maximally Informative Biological Atlases
- HyperMap: An Efficient Framework for Transferring Perturbation Responses Across Diverse Biological Contexts
- Changing COVID-19 vaccine eligibility could reshape disease burden for all
- Estimation of hospital catchment populations using data on patient hospital use in France
- Genetic prediction of long-term effects of aromatase inhibition on cancer and non-neoplastic disease risk
- Global, regional, and national individual and concurrent burden of dementia and mental disorders
- Epigenetic inflammation signatures and lung cancer risk among never-smoking women: a nested case-control study
- The Diurnal Rhythmicity of Untargeted Metabolomic Profiles in Humans
- Clinical malaria cases reflect the parasite population diversity of the asymptomatic reservoir in West Africa
- How threat perception of tick-borne diseases shapes preventive and control measures among dog owners in Iquitos, Peru.
- COVID-19 onset, stay-at-home orders, and racialized inequities in homicide mortality across the US
- Adverse childhood family environment is associated with altered cardiovascular regulation during exercise among young adults in the Coronary Artery Risk Development in Young Adults (CARDIA) Study
- DeepSeMS: revealing the hidden biosynthetic potential of the global ocean microbiome with a large language model
- Tracing the rise of biomedical foundation models
- MechFind: a computational framework for de novo prediction of enzyme mechanisms
- eSIG-Net: an interaction language model that decodes the protein code of single mutations
- Multimodal data analysis reveals asynchronous aging dynamics across female reproductive organs
- Engineering sensor-based antithetic integral controllers for enhanced dynamic performance and noise attenuation
- The impact of package selection and versioning on single-cell RNA-seq analysis
- NOT-gated chimeric antigen receptor circuits in T and NK cells
- Constructing a holistic map of cell fate decision by hyper solution landscape
- Systemic rhythmicity of host and bacterial bile acid amidates in the mouse
- Novel Knotted Solenoid fold with order-shifted coil arrangement leads to nontrivial 31 topology
- A parallel algorithm for the computation of the Jones polynomial
- Sparse identification of nonlinear dynamics and Koopman operators with Shallow Recurrent Decoder Networks
- Deep learning framework for quantifying self-organization in Myxococcus xanthus
- Fast automated adjoints for spectral PDE solvers
- Theoretical origins of extreme cell differentiation irreversibility in volvocine algae: A dynamic model of organismal size effects
- An analytically tractable framework for transcription–extrusion coupling in chromatin loop formation
- How do foragers use nonlocal information? A novel modeling framework
- Model reduction and analysis: A case study of a malaria control model
- Pillars of theoretical biology: A model for influenza with vaccination and antiviral treatment
- Mathematical modeling of neural stem cell migration within brain using multi-fiber tractography
- Emergence of spatiotemporal patterns beyond Turing-Hopf bifurcation in semi-arid vegetation systems
- Quantifying immune memory in colorectal cancer using fractional-order differential equations
- Investigation the epidemiological transition of ebola virus under contagious population with sustainable extended fractional operator
- Pathogen spillover in a seasonal cholera model
- Individual and population level uncertainty interact to determine the performance of outbreak surveillance systems
- Semi-parametric empirical bayes method for multiplet detection in snATAC-seq with probabilistic multi-omic integration
- Polyandry: A threat or an opportunity for the sterile insecttechnique?
- Computational insights on the molecular interplay between KRas (G12D mutation) and SOS1 modulated by the inhibitor BI-3406
- Stochastic intracellular calcium dynamics show preserved structures identified by deep learning classification
- Observer-Based Source Localization in Tree Infection Networks via Laplace Transforms
- Analysis of the Modulation of RAF Signaling by 14-3-3 Proteins
- Statistical and Structural Bias in Birth-Death Models
- Stochastic Analysis of Taxis and Kinesis Properties of Colonial Protozoa
- A Mathematical Model for Smooth Muscle Cell Phenotype Switching In Atherosclerotic Plaque
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- Primer: Drug discovery and patient-derived organoids
- Complex versus complicated systems biology, universality versus detailed modeling
- Simple systems, complex dynamics: Lessons from minimal gene regulatory networks
- Toward a systems view of life’s origins: Modeling the emergence of complexity across chemical, informational and ecological levels
- Intercellular coupling and synchronization of circadian clocks: Theoretical insights and experimental perspectives
- Stability and Self-Organized Patterns in Coupled Ecohydrological–Fire Dynamics: A Model of Vegetation–Rainfall–Bushfire Interactions
- On learning functions over biological sequence space: relating Gaussian process priors, regularization, and gauge fixing
- Threshold dynamics of a HBV infection model with degenerate diffusion, DNA-containing capsids and time-delays in heterogeneous environment
- Unravelling the spatiotemporal dynamics of amyloid-$$\beta $$–induced astrocyte–neuron network model in Alzheimer’s disease
- Multitype SIR epidemics among a population partitioned into households with proportionate global mixing