Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Theory of Cell Body Lensing and Phototaxis Sign Reversal in "Eyeless" Mutants of $Chlamydomonas$
- Alignment conditions of the human eye for few-photon vision experiments
- Single-cell directional sensing at ultra-low chemoattractant concentrations from extreme first-passage events
- Minority-Triggered Reorientations Yield Macroscopic Cascades and Enhanced Responsiveness in Swarms
- Technological folie \`a deux: Feedback Loops Between AI Chatbots and Mental Illness
- A Phase-field Model for Apoptotic Cell Death
- Uncovering Semantic Selectivity of Latent Groups in Higher Visual Cortex with Mutual Information-Guided Diffusion
- Linear Readout of Neural Manifolds with Continuous Variables
- Uncovering statistical structure in large-scale neural activity with Restricted Boltzmann Machines
- ATP Level and Phosphorylation Free Energy Regulate Trigger-Wave Speed and Critical Nucleus Size in Cellular Biochemical Systems
- Detecting and Subtyping Ketoacidosis from Metabolomic Patterns in Forensic Casework
- Trans-acting Determinants of Gene Expression: Effects of Transcription Factor Affinity, Abundance, and Localization
- Mechanistic Modeling of Intrinsic Drug Resistance in Prostate Cancer Apoptosis Signaling
- Phase-space distance between stationary states mudulates phenotypic plasticity in breast cancer
- Reconstructing biologically coherent cellular profiles from imaging-based spatial transcriptomics
- Dynamic effects of fructose and Momordica charantia supplementation on pulmonary hypertension in broiler chickens
- Metal binding site alignment enables network-driven discovery of recurrent geometries across sequence-divergent proteins and drug off-targets
- Structured Schemas for LLM-Modeler Collaboration in Quantitative Systems Pharmacology Model Calibration
- Network pharmacology-based discovery and experimental validation of novel drug repurposing candidates in Alzheimer's Disease
- Multi-omic responses to acute exercise in abdominal subcutaneous adipose tissue of sedentary adults: findings from MoTrPAC
- Prevalence of high-risk human papillomavirus genotypes and associated HIV co-infection in Cameroon: a systematic review and meta-analysis
- When Dose Matters: Linking Exposure, Environment, and Epidemic Persistence in Wildlife Systems
- Estimation of Annual Exposures and Antibody Kinetics Against Norovirus GII.4 Variants from English Serology Data, 2007-2012.
- Associations of plasma biomarkers of Alzheimer's pathology with longevity and healthspan
- Evaluation of pre-Omicron population immunity for SARS-CoV-2 in the Household Influenza Vaccine Evaluation (HIVE) cohort
- Wildlife hosts predict the distribution of reported coccidioidomycosis in the western United States
- Multimodal Ageing Biomarkers and Plasma Proteomic Signatures Associated with All-Cause Mortality
- Educational attainment and genetic liability to overweight: Body mass index across the adult life course in females and males
- Effectiveness of COVID-19 Vaccination Schedules Against Severe COVID-19 in Children Aged 6 Months to 4 Years in Brazil: A Population-Based Cohort Study (2023-2024)
- Transportability of missing data models across study sites for research synthesis
- stVCR: spatiotemporal dynamics of single cells
- Highly accurate ab initio gene annotation with ANNEVO
- Learning genes deeply
- mist: a hierarchical Bayesian framework for detecting differential DNA methylation dynamics in single-cell data
- Setting digital psychiatry in motion: towards dynamic digital markers for digital phenotyping
- Artificial intelligence for microbiology and microbiome research
- We wait for disease to shout—What if we listened when biology whispered?
- What problem do you hope bioengineering or synthetic biology approaches will enable us to tackle in the next decade?
- The hierarchical timescale hypothesis: Functional and structural convergence of biological networks and artificial neural nets
- Generative AI for synthetic biology: Designing biological parts, circuits, and genomes
- Mechanical compliance enhances the impulsive energy absorption of glassy polymer films
- Operator-level quantum acceleration of non-logconcave sampling
- Strategy evolution on temporal hypergraphs
- Scaling laws for function diversity and specialization across socioeconomic and biological complex systems
- Leveraging probabilistic forecasts for dengue preparedness and control: The 2024 Dengue Forecasting Sprint in Brazil
- Optimising chemotherapy for advanced high-grade serous ovarian cancer via delay-differential equations
- Age and generation-based model of metastatic cancer: From micrometastases to macrometastases
- The evolutionary success of angiosperms: a foundation of bioenergetic surplus
- Modeling how hunting strategies and pack size shape each other
- Local control of cellular proliferation underlies neuromast regeneration in zebrafish
- Stability and bifurcation of Mpox transmission model with population heterogeneity and booster vaccination
- A model for a population of trees structured by phenological traits
- Tumor growth and immune response: On the impact of the space-structuration of the tumor microenvironment
- A partition method for bounding continuous-time Markov chain models of general reaction network
- Modeling periodic transcriptions in tandem gene systems
- Multi-omics and network pharmacology identify IGFBP1 as an m6A-Epigenetic target of pueraria in NSCLC therapy
- Interpretable integration of unpaired multi-omics for Alzheimer’s diagnosis via cross-modal transformer reconstruction
- MoCETSE: A mixture-of-convolutional experts and transformer-based model for predicting Gram-negative bacterial secreted effectors
- Free energy perturbations in enzyme kinetic models reveal cryptic epistasis
- Dynamics of the formation of flat clathrin lattices in response to growth factor stimulus
- In Silico Comparison of Rifampicin and 25-desacetyl Rifampicin-Induced PXR-Mediated CYP450 Transcriptional Response in 3D Primary Human Hepatocytes
- Topological Data Analysis for Unsupervised Feature Selection in Large Scale Spatial Omics Data Sets
- Platelet Adhesion and Aggregation Dynamics over Collagen- and VWF-coated Surfaces: Insights from Dissipative Particle Dynamics Simulations and Microfluidic Experiments
- SSRCA: A Novel Machine Learning Pipeline to Perform Sensitivity Analysis for Agent-Based Models
- Evolutionary Dynamics at the Leading Edge of Biological Invasions
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- Bridging Mechanism and Data: Hybrid Modeling Approaches for Cancer and Aging Research
- Regulatory out-of-equilibrium processes in cells. Part II: Spatial Heterogeneities and condensates
- Regulatory out-of-equilibrium processes in cells. Part I: Temporal Heterogeneities and Oscillations
- Cell sorting models in tissue development
- Editorial overview: Mathematical modeling of disease processes
- Undesignable motifs in structural RNAs and combinatorial consequences
- Evolutionarily stable strategy in advective patchy environments
- Impact of network connectivity on the dynamics of populations in stream environments
- Mathematical modelling and analysis of unsteady poroelastohydrodynamics for an in-vivo type solid tumour
- A nonlocal West Nile virus model with nonlocal free boundary conditions driven by both mosquitoes and birds