Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Confidence is detection-like in high-dimensional spaces
- Universal Persistent Brownian Motions in Confluent Tissues
- From quantitative modeling of fluorescence experiments on biomolecules to the prediction of spectroscopic dye properties
- Towards Structure-Aware Surrogate Modeling: Explicit Region Interaction Improves Knee Contact Stress Prediction
- Multimodal Survival Modeling and Fairness-Aware Clinical Machine Learning for 5-Year Breast Cancer Risk Prediction
- The Subject of Emergent Misalignment in Superintelligence: An Anthropological, Cognitive Neuropsychological, Machine-Learning, and Ontological Perspective
- Local stabilizability implies global controllability in catalytic reaction systems
- From female choice to social structure: Modeling harem formation in camelids
- Effects of Training Data Quality on Classifier Performance
- Prediction of source nutrients for microorganisms using metabolic networks
- NF-κB transcriptionally enhances p53 accumulation dynamics hampering DNA repair
- Generalized Morphogenesis Theory: A Flow-Inertia Modeling Framework for Cross-Scale Dynamics of Dissipative Structures
- What microbes want: exploring microbial substrate preferences with the Web of Microbes Agent
- Geometric-Evolutionary Deep Learning Decodes the Human GPCR-Metabolome Interactome and Enables Systematic De-Orphanization
- Endocrine-metabolic decoupling drives stress vulnerability in dystrophin deficiency
- Leveraging Twin Information for Inference of Gene Regulatory Networks
- A Fine-Tuned Phosphatidylinositol Profile Contributes to Colonocyte Differentiation and Malignization: Evidence From Integrated Omics
- Flow constraints at infection site shape multiplication-dissemination trade-offs and opposite regulatory programs of Xanthomonas and Ralstonia xylem pathogens
- Multi-Omics Mapping of Human Kidney Reveals Complement-Mediated Cellular Dynamics During Progression of Focal Segmental Glomerulosclerosis
- A versatile method to pattern surfaces within microfluidic devices
- Machine learning-based prediction of cardiovascular disease risk in Africa using WHO Stepwise Surveys: 2014-2019
- Early Population-Level Impact of Helicobacter pylori Eradication on Gastric Cancer Deaths in Japan: A Counterfactual Analysis of Short-Term Divergence
- Multi-Omics characterization of biological pathways linking healthy dietary patterns to cardiometabolic disease risk across diverse populations
- Sub-district spatial heterogeneity in trachoma seroprevalence as populations approach elimination
- Spatio-temporal variation in the uptake of the Human Papilloma Virus (HPV) vaccine among Malawian girls between 2019 and 2024
- Subjective Financial Strain and Incident Heart Disease Among US Adults Aged 50 Years or Older
- Leisure-time physical activity on lifelong trajectories of body mass index and obesity risk throughout life: multivariable regression and Mendelian randomization analyses using real-world data from the CORDELIA-Catalunya Study
- Time-to-retraction and likelihood of evidence contamination (VITALITY Extension I): a retrospective cohort analysis
- Alcov2: a National Questionnaire Survey for Understanding the Transmission of SARS-CoV-2 in French Households during First Lockdown
- Automated Model Discovery Based on COVID-19 Epidemiologic Data
- Benchmarking EGF signaling pathway inference using phosphoproteomics and kinase-substrate interactions
- Growth rate-driven modelling suggests that phenotypic adaptation drives drug resistance in BRAFV600E-mutant melanoma
- Conditional diffusion with locality-aware modal alignment for generating diverse protein conformational ensembles
- Revealing the inherent design principles of the genetic code via an error correcting code representation
- Enhanced drug disease association prediction through multimodal data integration and meta path guided global local feature fusion
- Artificial intelligence for microbiology and microbiome research
- We wait for disease to shout—What if we listened when biology whispered?
- What problem do you hope bioengineering or synthetic biology approaches will enable us to tackle in the next decade?
- The hierarchical timescale hypothesis: Functional and structural convergence of biological networks and artificial neural nets
- Generative AI for synthetic biology: Designing biological parts, circuits, and genomes
- Operator-level quantum acceleration of non-logconcave sampling
- Strategy evolution on temporal hypergraphs
- Scaling laws for function diversity and specialization across socioeconomic and biological complex systems
- Leveraging probabilistic forecasts for dengue preparedness and control: The 2024 Dengue Forecasting Sprint in Brazil
- Reply to Cecchi and Palminteri: On the need to model temporal variation in learning rates
- Optimising chemotherapy for advanced high-grade serous ovarian cancer via delay-differential equations
- Age and generation-based model of metastatic cancer: From micrometastases to macrometastases
- The evolutionary success of angiosperms: a foundation of bioenergetic surplus
- Modeling how hunting strategies and pack size shape each other
- Local control of cellular proliferation underlies neuromast regeneration in zebrafish
- A partition method for bounding continuous-time Markov chain models of general reaction network
- Modeling periodic transcriptions in tandem gene systems
- Why does nature force the creation of proteobacteria community in the estuarine ecosystem? - A theoretical model
- Traveling wave formation enables strain coexistence in a spatial model of bacterial cross-feeding
- Bifurcation analysis and fear-induced reactions in non-refuged prey with cooperative hunting among predators: Deterministic and stochastic dynamics
- PON-Del predictor for sequence retaining protein deletions
- Viral evolution during primary infection in immunocompromised hosts
- Hemodynamic impact of acute liver injury on cardiac function: An in silico study via a closed-loop cardiovascular model
- A novel transformer-based platform for the prediction and design of biosynthetic gene clusters for (un)natural products
- Ten simple rules for coordinating a large digital health project: Perspectives from EU and implications for global contexts
- A Random Differential Equation Approach for Modeling the Growth of Microalgae in Photobioreactors
- Pattern Formation in Agent-Based and PDE Models for Evolutionary Games with Payoff-Driven Motion
- Mathematical Modeling of Lesion Pattern Formation in Dendritic Keratitis
- Modeling and Simulation of the Role of Mass Testing in Controlling COVID-19
- Inference of Genetic Networks from Pseudo Time Series of Single-cell Gene Expression Data using Modified Random Forests
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- Cell sorting models in tissue development
- Editorial overview: Mathematical modeling of disease processes
- Think before you fit: Parameter identifiability, sensitivity and uncertainty in systems biology models
- Machine-learned summary statistics for Bayesian inference of systems biology–model parameters: Opportunities and challenges
- Structural identifiability of compartmental models: Recent progress and future directions
- Bounds for survival probabilities in supercritical Galton-Watson processes and applications to population genetics
- Fractional derivatives in biomathematical models with memory: A critical discussion
- Spectral theory of stochastic gene expression: a Hilbert space framework
- Optimizing insecticide deployment strategies to delay quantitative resistance in mosquito populations
- Autocatalytic cores in the diluted regime: classification and properties