Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Noise-Induced Transitions and Coherence Resonance in a 5D Conductance-Based Neuronal Model
- TraianProt: a user-friendly R shiny application for wide format proteomics data downstream analysis
- An unsupervised clustering analysis of breast cancer data derived from electronic health records enhanced through UMAP dimensionality reduction
- State-dependent brain responsiveness, from local circuits to the whole brain
- Visual Semantic Decoding of Electrocorticography from Video Stimuli using End-to-End Deep Learning
- Biological Amnesia in ICU Time-Series Prediction: A Drift-Adaptive Two-Stream Architecture with Temporal Retrieval
- Additional Food Enhances the Bifurcation Structure of Predator Competition Models
- Is EEG-to-Text Feasible in Real-World Scenarios? An In-Depth Analysis Using a Neuropsychology-Inspired Benchmark
- Competitive and Complementary Tools
- Engineering T7 RNA Polymerase for High-Purity In Vitro Transcription
- Flux-species sampling enables holistic exploration of biocircuit behavior
- Rod pathway blockade improves visual function in a mouse model of photoreceptor degeneration
- A hybrid machine learning and enzyme-constrained metabolic model for ab initio prediction of proteome reallocation
- Dynamic knowledge representation of blood brain barrier activation, injury and restitution with a novel agent-based model
- ChatGEM: An Agentic Architecture Enabling Interactive Simulation of Genome-Scale Metabolic Models
- Quantitative Description of C. elegans mRNA Landscapes From High Coverage Single Cell Transcriptomes
- Slow stress-load accumulation dominates BDNF-dependent gain in a ten-state computational model of stress biochemistry
- Experimentally calibrated computational modeling of inflammation and vascular remodeling in breast cavity healing following breast-conserving surgery
- Diversity and evolution of the transcriptional regulatory networks of Pseudomonas strains revealed using machine learning
- Deep Visual Proteomics links vascular smooth muscle cell phenotypes to atherosclerotic plaque stability
- Profile of red blood cell disorders among healthy schoolchildren in the low malaria-endemic region in Indonesia
- Nocturnal cough as a syndromic surveillance signal for respiratory illness in England
- Multi-model forecasting of respiratory disease activity in Germany during the 2024-2025 season
- Acute associations between ambient air pollution and risks of preterm and early-term births: results from 8 states in the United States
- Multi-pathogen serosurveillance of vaccine preventable and neglected tropical diseases in Samoa 2018-2024 to inform public health action
- Bayesian shared-component spatiotemporal modeling of sexually transmitted infection co-occurrence: identifying geographic vulnerability across 204 countries, 1990-2023
- State-dependent non-identifiability of the reproduction number under adaptive behavior: an empirical characterization from COVID-19 mobility
- Epidemiological Analysis of the 2026 Bundibugyo Virus Disease Outbreak and Rapid Risk Assessment for North Africa and Europe
- Social Adversity, Systemic Inflammation, and the Ticking of the Biological Aging Clocks in Men and Women
- Implementing the National Alzheimer's Coordinating Center Uniform Data Set (v3) within the Diabetes Prevention Program Outcomes Study
- Precise DNA base editing using AlphaFold3-based contact modelling
- Designed to bind
- An enzyme-specific protein language model for catalytic property prediction
- Enhanced fuzzy joint mutual information with Cuckoo Search Algorithm and genetic algorithm for diagnostics of chronic kidney disease prediction
- Label-free segmentation of mitochondria for simultaneous morphological and metabolic studies
- RIG-Ing the system to balance immune activation and inflammatory tissue damage in the airways
- Programmable regenerative tissues: Converging mammalian synthetic biology and tissue engineering
- The molecular landscape of cellular metal ion biology
- BulkFormer: A large-scale foundation model for bulk transcriptomes
- Quantitative cytokine profiling of primary human macrophages reveals distinct single-cell modes of trained immunity
- Correction for Patel, The simplicity of the Hodge bundle
- Daring few, patient many: Division of labor in decentralized foraging collectives
- Modeling framework to demonstrate elimination of a vector population: Tsetse elimination in Chad
- Spatial and temporal prediction of Aedes aegypti populations with atmospheric and urban forms dependence
- Mathematical modeling of JAK2V617F clonal expansion in a general population cohort
- Evolution of quantitative traits: Exploring the ecological, social and genetic bases of adaptive polymorphism
- Directed cell migration from protrusion-adhesion coupling under local chemotactic regulation
- Integrated tick management strategies in fragmented peridomestic environments
- The male-biased sex ratio in humans and its role in the transition from promiscuity to pair bonding
- Quantifying the counter-intuitive effects of vaccination by coupling the transmission dynamics of COVID-19 and the evolution of human behaviors
- Seasonal impacts on brucellosis transmission mediated by live sheep supply-demand dynamics
- A delay differential model for antiviral treatment and rebound dynamics
- Adding a fecundity-survival trade-off to a discrete population model with maturation delay
- Optimal melanoma treatment protocols: A bilinear control model
- Distributed majority consensus in synthetic microbial consortia with bursty gene expression
- Large vision model framework for automated C. elegans analysis: From static morphometry to dynamic neural activity
- Coordinative structures as scale-free networks: Cascade and percolation dynamics in motor learning with empirical validation
- Eco-evolutionary dynamics lead to functionally robust and redundant communities
- Ergodicity transformations predict human decision-making under risk
- Pathways for glomerular macromolecule filtration: A mathematical model for transport across glomerular filtration surface, mesangium and shear-induced shunts
- Who wins? Analysis and Simulation of a Batch Culture Model of Bacterial Competition in the Presence of Plasmids
- Spatial Establishment of Autotetraploid Populations Follows the Propagation of Bistable Waves of Advance
- Stability and Robustness of a Generalized Pump-Leak Model for Epithelial Vesicles
- Global Stability Analysis of a Mathematical Model for the “Shock-and-Kill" Strategy in HIV-1/SIV Brain Infection
- Phylogenetic Network Models as Graphical Models
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- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- A dialog between cell adhesion and topology at the core of morphogenesis
- Computational models of cellular bioenergetics indicate the role of Ca2+-regulated pyruvate dehydrogenase in metabolic remodeling
- Dynamics of cell fate patterning in discrete multicellular systems
- Global stability of an SIQR switched model with multiple two-threshold structures
- Hyper-exponential growth in an epidemic model: some explicit solutions and their significance
- Global dynamics of a spatially heterogeneous diffusive two-strain epidemic model with varying total population
- Exploring the evolution of maturation time via strong competition model with stage structure
- A reaction telegraph model reveals synergy between motility strategies in Myxococcus xanthus predation