Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
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- Single-Cell Spatial Proteomics Uncovers Molecular Interconnectivity among Hallmarks of Aging
- Structural and Metabolic Characterization of Ni(I)-inhibitors Provide a Robust Anti-Methanogenicity Scoring System
- The Potential Effect of Vitamin D Supplement on Selected Coagulability Predictors in Vape-Exposed Female Rats
- Constraint Semantics for Multi-level Organization
- Variation of Human Transfer RNA Demand and Supply
- CellSwarm: LLM-Driven Cell Agents Recapitulate Tumor Microenvironment Dynamics and Sense Indirect Genetic Perturbations
- Aging under immunosuppression reshapes human immune compartments and lowers clinical alloreactivity after heart transplantation
- NF-κB transcriptionally enhances p53 accumulation dynamics hampering DNA repair
- Generalized Morphogenesis Theory: A Flow-Inertia Modeling Framework for Cross-Scale Dynamics of Dissipative Structures
- What microbes want: exploring microbial substrate preferences with the Web of Microbes Agent
- Leveraging pediatric emergency visits as early signal for respiratory hospitalization forecasting
- Continuous glucose monitor-derived glucotypes and cardiovascular risk scores in individuals without diabetes
- Spatial Clustering of School Susceptibles Drives Divergent US Measles Outbreaks
- Work-related stress and consumption of psychoactive substances and medications among early childhood professionals in Orleans Metropole, CCTVL, and Fleury-les-Aubrais (TraPsyCOL): Study protocol for a cross-sectional study
- Constructing and analyzing a synthetic life course cohort based on pooling two data sources: A case study of early adulthood depression symptomatology and late-life cognition
- Machine learning-based prediction of cardiovascular disease risk in Africa using WHO Stepwise Surveys: 2014-2019
- Multi-Omics characterization of biological pathways linking healthy dietary patterns to cardiometabolic disease risk across diverse populations
- Alzheimers risk markers and resting-state dynamic functional connectivity: Cross-Sectional Findings from the AGUEDA Study
- Early life blood pressure, cognitive function and brain aging in mid-to-late life: A synthetic longitudinal cohort analysis
- Early Population-Level Impact of Helicobacter pylori Eradication on Gastric Cancer Deaths in Japan: A Counterfactual Analysis of Short-Term Divergence
- Reconstructing single-cell resolution from spatial transcriptomics with CellRefiner
- Generative models of cell dynamics: from Neural ODEs to flow matching
- SynthEHR-eviction: enhancing eviction SDoH detection with LLM-augmented synthetic EHR data
- Benchmarking EGF signaling pathway inference using phosphoproteomics and kinase-substrate interactions
- Growth rate-driven modelling suggests that phenotypic adaptation drives drug resistance in BRAFV600E-mutant melanoma
- Artificial intelligence for microbiology and microbiome research
- We wait for disease to shout—What if we listened when biology whispered?
- What problem do you hope bioengineering or synthetic biology approaches will enable us to tackle in the next decade?
- The hierarchical timescale hypothesis: Functional and structural convergence of biological networks and artificial neural nets
- Generative AI for synthetic biology: Designing biological parts, circuits, and genomes
- Operator-level quantum acceleration of non-logconcave sampling
- Strategy evolution on temporal hypergraphs
- Scaling laws for function diversity and specialization across socioeconomic and biological complex systems
- Leveraging probabilistic forecasts for dengue preparedness and control: The 2024 Dengue Forecasting Sprint in Brazil
- Reply to Cecchi and Palminteri: On the need to model temporal variation in learning rates
- Optimising chemotherapy for advanced high-grade serous ovarian cancer via delay-differential equations
- Age and generation-based model of metastatic cancer: From micrometastases to macrometastases
- The evolutionary success of angiosperms: a foundation of bioenergetic surplus
- Modeling how hunting strategies and pack size shape each other
- Local control of cellular proliferation underlies neuromast regeneration in zebrafish
- A model for a population of trees structured by phenological traits
- Tumor growth and immune response: On the impact of the space-structuration of the tumor microenvironment
- A partition method for bounding continuous-time Markov chain models of general reaction network
- Modeling periodic transcriptions in tandem gene systems
- Why does nature force the creation of proteobacteria community in the estuarine ecosystem? - A theoretical model
- Putting BASIL in a BLT: A Bayesian filtering method for estimating the fitness effects of nascent adaptive mutations
- Combining seasonal malaria chemoprevention with novel therapeutics for malaria prevention: a mathematical modelling study
- Viral evolution during primary infection in immunocompromised hosts
- PON-Del predictor for sequence retaining protein deletions
- Hemodynamic impact of acute liver injury on cardiac function: An in silico study via a closed-loop cardiovascular model
- A Random Differential Equation Approach for Modeling the Growth of Microalgae in Photobioreactors
- Pattern Formation in Agent-Based and PDE Models for Evolutionary Games with Payoff-Driven Motion
- Mathematical Modeling of Lesion Pattern Formation in Dendritic Keratitis
- Modeling and Simulation of the Role of Mass Testing in Controlling COVID-19
- Inference of Genetic Networks from Pseudo Time Series of Single-cell Gene Expression Data using Modified Random Forests
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- Cell sorting models in tissue development
- Editorial overview: Mathematical modeling of disease processes
- Think before you fit: Parameter identifiability, sensitivity and uncertainty in systems biology models
- Machine-learned summary statistics for Bayesian inference of systems biology–model parameters: Opportunities and challenges
- Structural identifiability of compartmental models: Recent progress and future directions
- Bounds for survival probabilities in supercritical Galton-Watson processes and applications to population genetics
- Fractional derivatives in biomathematical models with memory: A critical discussion
- Spectral theory of stochastic gene expression: a Hilbert space framework
- Optimizing insecticide deployment strategies to delay quantitative resistance in mosquito populations
- Autocatalytic cores in the diluted regime: classification and properties