Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- What Topological and Geometric Structure Do Biological Foundation Models Learn? Evidence from 141 Hypotheses
- LA-MARRVEL: A Knowledge-Grounded, Language-Aware LLM Framework for Clinically Robust Rare Disease Gene Prioritization
- Validating Interpretability in siRNA Efficacy Prediction: A Perturbation-Based, Dataset-Aware Protocol
- BInD: Bond and Interaction-generating Diffusion Model for Multi-objective Structure-based Drug Design
- TCR-EML: Explainable Model Layers for TCR-pMHC Prediction
- Non-Monotone Traveling Waves of the Weak Competition Lotka-Volterra System
- Privacy-Preserving Collaborative Medical Image Segmentation Using Latent Transform Networks
- Risk mapping novel respiratory pathogens with large-scale dynamic contact networks
- Can deleterious mutations surf deterministic population waves? A functional law of large numbers for a spatial model of Muller's ratchet
- Multicellular Tumour Spheroids Exposure to Pulsed Electric Field: A Combined Experimental and Mathematical Modelling Study Highlighting Temporal Dynamics of DAMP Release and Accelerated Regrowth at Intermediate Field Intensities
- On the limits of detection of epistatic higher-order interactions
- Toroidal Search Algorithm: A Topology-Inspired Metaheuristic with Applications to ODE Parameterization in Mathematical Oncology
- A systemic circadian nicotinic acid riboside (NaR) signal engages the unfolded protein response and adipogenesis via the prefoldin complex
- Integrative Multi-omics Analysis of the Human Skeletal Muscle Response to Endurance or Resistance Exercise: Findings from the Molecular Transducers of Physical Activity Consortium (MoTrPAC)
- dAMN: a genome scale neural-mechanistic hybrid model to predict bacterial growth dynamics
- Molecular Transducers of Physical Activity Consortium (MoTrPAC): Initial Insights into the Dynamic Human Responses to Exercise
- MORPHE: Bridging Image Generation and Spatial Omics for Tissue Synthesis
- An analytical framework for phenotypic selection of fitness-conferring genes
- Two Stages of Dynamic Metabolic and Transcriptomic Remodeling During the Adaptation to Caloric Restriction in Male C57BL/6J
- Ageing impacts extracellular matrix turnover and remodelling in the kidney
- Identification of Major Congenital Malformations based on Healthcare Databases in France: a Proof-of-Concept Study using the EPI-MERES Nationwide Mother-Child Register
- Would Lifting Versus Maintaining COVID-19 Containment Policies Have Reduced Psychological Distress in the US?
- The Impact of Neglecting Vaccine Unwillingness in Epidemiology Models
- Price Per Standard Drink and Alcohol-Related Outcomes Among Vulnerable Groups in British Columbia: Findings from the Costs, Harms, Expenditures and Alcohol Prices Study
- An E-value-Informed Sensitivity Analysis Framework for Hybrid Controlled Trials
- Risk mapping novel respiratory pathogens with large-scale dynamic contact networks
- A bootstrap particle filter for viral Rt inference and forecasting using wastewater data
- Immunotherapies for risk reduction in age-associated neurodegenerative diseases: impact of sex and treatment duration
- Spatiotemporal Trends in Suicide: Sociodemographic, Economic, and Environmental Factors
- Less is more: modelling the impact of species-targeted versus broadcast larviciding approaches for malaria control in rural settings
- Hybrid optimization algorithm for solving path planning problems based on grey wolf optimization algorithm
- Cut instance mixing: A domain-specific data augmentation method applied to gastrointestinal lesion detection
- Reinforcement learning-based design of sequential drug treatment targeting the evolving tumour landscape with SequenTx
- Multi task learning based early prediction model for antibiotic resistance using multi institutional cohort data
- A unified framework for multiomics deconvolution
- Artificial intelligence for microbiology and microbiome research
- We wait for disease to shout—What if we listened when biology whispered?
- What problem do you hope bioengineering or synthetic biology approaches will enable us to tackle in the next decade?
- The hierarchical timescale hypothesis: Functional and structural convergence of biological networks and artificial neural nets
- Generative AI for synthetic biology: Designing biological parts, circuits, and genomes
- Mechanical compliance enhances the impulsive energy absorption of glassy polymer films
- Operator-level quantum acceleration of non-logconcave sampling
- Strategy evolution on temporal hypergraphs
- Scaling laws for function diversity and specialization across socioeconomic and biological complex systems
- Leveraging probabilistic forecasts for dengue preparedness and control: The 2024 Dengue Forecasting Sprint in Brazil
- Optimising chemotherapy for advanced high-grade serous ovarian cancer via delay-differential equations
- Age and generation-based model of metastatic cancer: From micrometastases to macrometastases
- The evolutionary success of angiosperms: a foundation of bioenergetic surplus
- Modeling how hunting strategies and pack size shape each other
- Local control of cellular proliferation underlies neuromast regeneration in zebrafish
- A model for a population of trees structured by phenological traits
- Tumor growth and immune response: On the impact of the space-structuration of the tumor microenvironment
- A partition method for bounding continuous-time Markov chain models of general reaction network
- Modeling periodic transcriptions in tandem gene systems
- Why does nature force the creation of proteobacteria community in the estuarine ecosystem? - A theoretical model
- ConNIS and labeling instability: New statistical methods for improving the detection of essential genes in TraDIS libraries
- Reconstructing the incidence rate and immune fraction of the population via a single snapshot survey: A case study of COVID-19 in Japan
- Morphological determinants of glycosylation efficiency in Golgi cisternae
- Contrastive learning for passive acoustic monitoring: A framework for sound source discovery and cross-site comparison in marine soundscapes
- An integrative analysis reveals the mechanism of plastic stabilizers inducing breast cancer
- In Silico Comparison of Rifampicin and 25-desacetyl Rifampicin-Induced PXR-Mediated CYP450 Transcriptional Response in 3D Primary Human Hepatocytes
- Topological Data Analysis for Unsupervised Feature Selection in Large Scale Spatial Omics Data Sets
- Platelet Adhesion and Aggregation Dynamics over Collagen- and VWF-coated Surfaces: Insights from Dissipative Particle Dynamics Simulations and Microfluidic Experiments
- SSRCA: A Novel Machine Learning Pipeline to Perform Sensitivity Analysis for Agent-Based Models
- Evolutionary Dynamics at the Leading Edge of Biological Invasions
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- Regulatory out-of-equilibrium processes in cells. Part I: Temporal Heterogeneities and Oscillations
- Cell sorting models in tissue development
- Editorial overview: Mathematical modeling of disease processes
- Think before you fit: Parameter identifiability, sensitivity and uncertainty in systems biology models
- Machine-learned summary statistics for Bayesian inference of systems biology–model parameters: Opportunities and challenges
- Impact of network connectivity on the dynamics of populations in stream environments
- Mathematical modelling and analysis of unsteady poroelastohydrodynamics for an in-vivo type solid tumour
- A nonlocal West Nile virus model with nonlocal free boundary conditions driven by both mosquitoes and birds
- Arboreal networks and their underlying trees
- Spatial modeling of forest-savanna bistability: impacts of fire dynamics and timescale separation