Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Speaker effects in language comprehension: An integrative model of language and speaker processing
- Quantifying structural uncertainty in chemical reaction network inference
- Epigenetic feedback reshapes dynamical landscapes in gene regulatory networks
- A Large-Scale Comparative Analysis of Imputation Methods for Single-Cell RNA Sequencing Data
- smICA: Open-Source Software for Quantitative, Lifetime-Resolved Mapping of Absolute Fluorophore Concentrations in Living Cells
- Using PyBioNetFit to Leverage Qualitative and Quantitative Data in Biological Model Parameterization and Uncertainty Quantification
- Predicting success of cooperators across arbitrary heterogeneous environmental landscapes
- Building and maintaining a System of Intracellular Compartments
- The IQ-Motion Confound in Multi-Site Autism fMRI May Be Inflated by Site-Correlated Measurement Uncertainty
- oxo-call: Documentation-grounded Skill Augmentation for Accurate Bioinformatics Command-line Generation with Large Language Models
- Hyperbolic stratification of protein intrinsic disorder and structure-mediated interactions in the human protein interactome
- Equation-Based Integration of Flux Balance Analysis with Diffusion for Spatio-Temporal Simulation of Microbial Communities
- Pushing the limits of SCP: bacSCP, a proof-of-concept study to investigate heterogeneity of bacteria by single cell proteomics.
- Recently emerged Fusarium chemotypes reprogram wheat defence and detoxification networks during Fusarium head blight development
- Modeling and dissecting bidirectional feedback in gene-metabolite systems using the CausalFlux method
- Rhythmic gene expression and behavioral plasticity in harvester and carpenter ants
- Cell-Type-Resolved Pseudobulk Classification Across Independent Cohorts Identifies Microglial PTPRG as a Transcriptional Hub in Alzheimer's Disease
- Antimony 3: Extending human-readable model definitions for SBML Level 3 Core and Packages
- Improved inference of multiscale sequence statistics in generative protein models
- Time-dependent memory of hypoxia exposure influences tumor invasion dynamics
- Novel risk models based on screening history results and timing of lung cancer diagnosis: Post hoc analysis of the National Lung Cancer Screening Trial
- Prioritising determinants of systemic inflammation across molecular, physiological and disease phenotypes.
- A multidomain intrinsic capacity score tracks longitudinal health trajectories in the UK Biobank
- SARS-CoV-2 Introductions into Lao PDR Revealed by Genomic Surveillance, 2021-2024
- Why Invariant Risk Minimization Fails on TabularData: A Gradient Variance Solution
- GPS Mobility Tracking, Ecological Momentary Assessment, and Qualitative Interviewing to Specify How Space Produces Intersectional Health Inequities: Development and Pilot Testing of the Spatial Intersectionality Health Framework (SIHF) and IGEMA Methodology
- Noisy periodicity in tropical respiratory disease dynamics
- Sexual risk behaviours following medical male circumcision: a matched pseudo-cohort analysis using population-based survey data
- Effect of a sanitation intervention on the nutritional status of children in Maputo, Mozambique: a controlled before-and-after trial
- Recombinant zoster vaccination in patients with dementia is associated with improved survival and better cognitive preservation
- KIMMDY: a biomolecular reaction emulator
- Phenotypic prediction of missense variants via deep contrastive learning
- The optimization of neuroprosthetic interfaces relying on biophysical and surrogate digital twins
- Hi-Compass: a depth-aware deep learning framework for predicting cell-type-specific 3D genome organization from single-cell to spatial resolution
- A multi-modal diffusion model with dual-cross-attention for multi-omics data generation and translation
- Engineering sensor-based antithetic integral controllers for enhanced dynamic performance and noise attenuation
- The impact of package selection and versioning on single-cell RNA-seq analysis
- NOT-gated chimeric antigen receptor circuits in T and NK cells
- Constructing a holistic map of cell fate decision by hyper solution landscape
- Systemic rhythmicity of host and bacterial bile acid amidates in the mouse
- Deep learning framework for quantifying self-organization in Myxococcus xanthus
- Fast automated adjoints for spectral PDE solvers
- A swarm intelligence approach to density function reconstruction from moments using entropy optimization
- Fitting coarse-grained models to macroscopic experimental data via automatic differentiation
- Free information disrupts even Bayesian crowds
- Adaptive Dynamics models for the evolution of class-structured populations in stable systems
- Impacts of hunting cooperation among predators on predator-prey dynamics
- Modelling cancer cell dormancy in mice: Heavy-tailed distributions and the role of cancer cell death in reactivation times
- Synergy between CO2 and water activity in subaerial biofilms in varying environments
- Quantifying the effect of threshold-triggered interventions on hepatitis E virus outbreaks
- Persistence for a class of nonautonomous systems of differential equations with unbounded delays
- How mathematical forms of chemotherapy and radiotherapy bias model-optimized predictions: Implications for model selection
- Investigating the impact of adipose derived media on ovarian cancer: Insights from a 3D in-silico model
- How generalist predation shapes a predator-prey model: A bifurcation analysis
- Oncolytic viral therapy under type I interferon regulation: Mathematical modeling and analysis
- Nonlinear effects of noise on outbreaks of mosquito-borne diseases
- Ten simple rules for organising an effective student-led writing retreat
- Dynamic cholinergic signaling differentially desynchronizes cortical microcircuits dependent on modulation rate and network connectivity
- Efficiency, accuracy and robustness of probability generating function based parameter inference method for stochastic biochemical reactions
- Rural-to-urban migrant worker mobility shaped measles epidemics in China
- Stochastic Analysis of Taxis and Kinesis Properties of Colonial Protozoa
- A Mathematical Model for Smooth Muscle Cell Phenotype Switching In Atherosclerotic Plaque
- Macrophage Polarization Determines Inflammation Amplification and Resolution
- Vascular-Coupled Modeling of Treatment Resistance in Tyrosine Kinase Inhibitor Therapy: Parameter Estimation and Phase-Dependent Sensitivity Analysis
- Revisiting Turing’s Chemical Basis of Morphogenesis
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- Primer: Drug discovery and patient-derived organoids
- Simple systems, complex dynamics: Lessons from minimal gene regulatory networks
- Toward a systems view of life’s origins: Modeling the emergence of complexity across chemical, informational and ecological levels
- Intercellular coupling and synchronization of circadian clocks: Theoretical insights and experimental perspectives
- Carleman-linearized epidemic models as a route to a data-driven algebraic estimate of the effective reproduction number
- The role of multiscale and delayed dynamics in tuberculosis Transmission and control: a mathematical approach
- Age-structured mechanical models for tumor growth
- Dynamics and suppression paradox of a stage-structured model for mosquito control
- Emergence of microbial host dormancy during a persistent virus epidemic
- Predator-prey system with a boundary-upstream protection zone in open advective environments