Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Imperfect molecular detection can renormalize apparent kinetic rates in stochastic gene regulatory networks
- Cell Division Changes Fate Decisions in a Genetic Toggle Switch
- A Deep Generative Model for Resting-State EEG Synthesis and Transferable Representation Learning
- Overlooked weak structural connections support human cognition under nonlinear connectome scaling
- DeepForestVisionV2: Ecology-Driven Taxonomy Expansion for Camera-Trap Monitoring in African Tropical Forests
- Synchronization modes in bipartite oscillator networks
- Quadratic Forms for Measuring Geometric Trees in 3-dimensional Space
- Multi-type branching inference on contact trees with application to COVID-19
- West Nile virus outbreak in Italy modelled with the quantum Game of Life
- PepALD: Macrocyclic Peptide Generation via Autoregressive Latent Diffusion
- Receptor-structured modelling of EGFR-driven tumor initiation: from spatially resolved cell-based simulations to reduced population dynamics
- Intricate Dynamical Cross-Talk Between p53 Protein and Cell Cycle Regulators Governs Mammalian Cell Fate
- Reductive carboxylation via isocitrate dehydrogenase 1 supports cardiac metabolic adaptation during oncometabolic stress.
- Comparative Evaluation of DDA and DIA Based Proteomic Workflows in Beryllium Related Lung Disease
- Antifungal tolerance and resistance dynamics depend on infection load, drug treatment, and host innate immunity
- Purinergic signaling disrupts emergent patterns of multicellular coordination in basal Xenobots.
- PRIME: scalable, robust inference of mechanistic cell states from multimodal single-cell counts via probability generating functions
- Untargeted cord blood metabolomics reveals altered lipid metabolism in neonates with gastroschisis
- Organizing principles in the Nitrogen-Carbon Landscape of Marine Heterotrophic Bacteria
- Cellular Complexity and Systemic Immune Profiles across Ancestral Diversity in Thailand and Mainland Southeast Asia
- Consistency of sleep timing and duration are associated with more physical activity and favorable heart rate metrics in a naturalistic cohort
- Guiding the development of climate counterfactuals for health impact attribution studies
- Early-life Urban Environment, Nutrition, and Pubertal Timing in Southern Europe: An Exposome Analysis
- Excess mortality in Germany during 2020-2023: A descriptive age-stratified analysis
- Non-Medical COVID-19 Impacts and Hearing Status: A Global Study of Differential Health Impact Among Deaf, Hard of Hearing, and Hearing Populations
- Sao Tome and Principe on the verge of eliminating lymphatic filariasis as a public health problem: evidence from IDA impact assessment surveys
- Menopausal symptoms in peri- and postmenopausal women: systematic review and meta-analysis of prevalence, incidence, comorbidities, and clinical outcomes
- Identifying anaphylaxis using weakly-supervised prediction models and natural language processing
- Accounting for Human Movement to Improve Exposure-Health Models
- A multistate model of frailty progression after severe infections in adults >=65 years in England: a matched-cohort study
- Scalable, fast and accurate differential gene expression testing from millions of cells of multiple patients
- PhotIQA: A photoacoustic image data set with image quality ratings
- Modeling visual memorability assessment with autoencoders reveals characteristics of memorable images
- Leveraging longitudinal data to boost statistical power for gene–environment interaction analysis
- A minimal chemo-mechanical Markov model for rotary catalysis of F1-ATPase
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- Mathematical modeling of JAK2V617F clonal expansion in a general population cohort
- Correction for Zhang et al., Deep learning framework for quantifying self-organization in Myxococcus xanthus
- Quantum algorithms for viscosity solutions to nonlinear Hamilton–Jacobi equations based on an entropy penalization method
- Mean field game model of the impact of reductions in support on faculty research activity
- Symmetry-breaking thermomagnetic dynamics of ferrofluid: Oscillation, spontaneous rotation, and flow bistability under laser irradiation
- Long-range interaction of multi-spiral cAMP waves in Dictyostelium discoideum amoeba aggregation
- A physiologically based mathematical model describing estradiol and progesterone actions on glucose-insulin dynamics throughout the menstrual cycle
- Modelling the impact of vaccination-dependent contact rates on disease transmission: Applications to COVID-19
- A voter-model representation of the multi-allelic Moran process: Exact stationary distributions and diversity thresholds from well-mixed populations to complex networks
- Managed-bee supplementation may drive parasite-mediated exclusion of wild bees
- Impacts of cooperative hunting and Allee effect on the dynamics of a three-species system with sexually reproducing top predators
- Optimal experiment design for practical parameter identifiability and model discrimination
- Modeling the impact of adiponectin on tumor-immune dynamics: Stability, bifurcations, and optimal control
- Exploring meteorological drivers in the transmission dynamics of viral and bacterial diarrhea: A modeling study in Davao City, Philippines
- Generalized quasispecies model with time delays and periodic fluctuations in replication
- scMagnifier: Resolving fine-grained cell subtypes via GRN-informed perturbations and consensus clustering
- Mechanisms underlying spontaneous and evoked calcium responses in oligodendrocyte precursor cells: A modeling investigation
- A comparison of contact patterns derived from the population structure in agent-based models and empirical contact survey data
- Ten simple rules for turning your qualifying exam into an NIH-style fellowship proposal: A guide for graduate students
- Combining machine learning and iterative experiments to keep pace with emerging viral variants of concern
- Dynamical Behavior and Control Optimization of a Zoonotic Epidemic Model Incorporating Temperature Effects: Analysis and Simulations
- An Idealized Model of Extrusome Ejection Through the Collapse of a Capsule
- A New Insight into the Threshold and Oscillatory Regimes in Plant-Pathogen Models: A Nutrient-Driven Approach
- Modeling the Impact of Dynamic Gastric pH on Helicobacter pylori Eradication and Antibiotic Resistance Emergence
- A Modeling Approach to Stomatal Conductance under Different Vapor Pressure Conditions
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- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- A dialog between cell adhesion and topology at the core of morphogenesis
- Computational models of cellular bioenergetics indicate the role of Ca2+-regulated pyruvate dehydrogenase in metabolic remodeling
- Dynamics of cell fate patterning in discrete multicellular systems
- Primer: Drug discovery and patient-derived organoids
- Stoichiometric balance and sustained rhythms
- A generalised framework for building complex networks of evolution equations
- Effect of transcriptional delay on ribosome abundance control
- Spiking neural models for decision-making tasks with learning
- Modelling the effect of antibody depletion for dose-response behavior of common immunostaining protocols