Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
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- Monitoring the translation initiation process in prokaryotes via large-scale examination using optimized SSU-seq technique
- RI-SINDy: Regulation-Informed Sparse Model Discovery in Biological Gene Networks
- Impact of oxygen fluctuation and consumption on the dynamics of a reduced go-or-grow model for tumor cell invasion
- The Gαi/o GPCR LPAR2 Acts as a Non-Classical Factor for Aldosterone Induced Injury in a Cardiomyocyte Model
- Organizing principles of the cellular electron economy
- Assay coverage reshapes metabolic diagnosis and the interpretation of pathway disturbance
- Scalable and semi-automated Boolean network inference from multi-condition single-cell transcriptomes with scBOLT
- Mucosal architecture, microbiota resilience and metabolic disruption reveal holobiont dynamics during bovine respiratory disease
- A quantitative interactome map reveals affinity tailored hijacking of human cellular functions by resident and pathogenic bacteria
- ProteomeScout v4: An open-source, harmonized, ecosystem for post-translational modifications
- Social and behavioral risk factors are associated with age-related differences in sustained attention: A cross-sectional GradCPT analysis of the All of Us dataset
- Overdose-related communication in Connecticut: reported receipt, perceived utility, and responses among overdose prevention and response professionals
- Predicting Cervical Cancer Screening Utilization Among Women of Reproductive Age in Ethiopia Using Supervised Machine Learning: A Nationally Representative 2024/25 EDHS Study
- Identifying Register-Based Severity Trajectories in Anorexia Nervosa: Associations with Polygenic Scores, Psychiatric and Somatic Conditions
- Potential effect of replacing sedentary behavior with physical activity on the risk of atrial fibrillation: results from the UK Biobank and REGARDS study
- Role of heterogeneous infection histories on variant dynamics: exact and approximate approaches
- Mortality and vaccine-preventable deaths from severe acute respiratory infections in Brazil in 2026
- History-dependent SEIR models: equivalent formulations, fractional foundation, and growth and decay principles
- Diurnal Heart Rate Range and Heart Rate Excursions: Novel Characterizations of Wearable Heart Rate Variability With an Application to Aging
- Age as a Leading Indicator: A Multi-Outcome Analysis of Influenza Lead-Lag Relationships
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- Mapping the combinatorial coding between olfactory receptors and perception with deep learning
- Multiobjective learning and design of bacteriophage specificity
- Synthetic tissue ecology: Ecological control of developmental self-organization across scales
- A diversified consortium of engineered biosensors enables multi-target quantification
- Interpretable biophysical neural networks of transcriptional activation domains separate roles of protein abundance and coactivator binding
- Generalized Taylor’s law for infinite-mean heavy-tailed data under dependence and heterogeneity
- Mathematical discovery and exploration can be done at scale
- Mantis: A foundation model for mechanistic disease forecasting
- Large-scale semidefinite programming with graphics processing units
- Network topology creates independent control of multiple checkpoints in the cell cycle system
- Echoes before collapse: Deep learning detection of flickering in complex systems
- Utility-driven cooperation and emergent group diversity in the N-player Stag Hunt game: A framework relevant to collective biological behavior
- From neural propagation to conscious experience: A geometro-diffusion theory of consciousness
- Stochastic dynamics of an epidemic-behavior model
- Pillars of theoretical biology: Superspreading and the effect of individual variation on disease emergence
- Optimising malaria and dengue case management through optimal diagnostic test allocation under budget constraints
- Revisiting Fulvestrant Dosing: Biomarker-Driven Mathematical PK/PD Modeling and Dosing Optimization in Estrogen Receptor–Positive Breast Cancer
- Trade-off between Allee remediation and disease transmission for adaptive survival: A mathematical model on Allee-exposed species
- Scalable branch-and-bound model selection with non-monotonic criteria including AIC, BIC and Mallows’s Cp
- Optimal control of dengue under vaccine heterogeneity: From dynamical analysis to dynamic strategy optimization
- Omics data discovery agents: Agent-supported retrieval, reanalysis, and synthesis of published omics data
- CardamomOT: A mechanistic optimal transport-based framework for gene regulatory network inference, trajectory reconstruction and generative modeling
- HiFIseek: Gene-specific enrichment of high-impact mutations in associated genomic regions
- Mobility hinders malaria elimination goals in the Brazilian Amazon
- Spatial Transcriptomics As Rasterized Image Tensors (STARIT) characterizes cell states with subcellular molecular heterogeneity
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- Next-generation metabolic models: From multi-constraint integration to AI-driven whole-cell kinetic simulation
- Unleashing the potential of whole-cell modelling one step at a time
- The evolution of standards in systems biology: From metabolic and multi-scale to whole-cell models
- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
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