Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- You Are in Control of Your State: Why Human Outcomes Are Controllable Through Causal State Intervention
- Calibrating Generative Models to Distributional Constraints
- Impact of temporary lockdown on disease extinction in assortative networks
- Competition at the front of expanding populations
- BIRDS: Characterizing and Understanding Biodiversity Impact of Large Language Model Serving
- Inward rectifier potassium channels interact with calcium channels to promote robust and physiological bistability
- Graph Neural Network Reveals the Cortical Morphology of Local Brain Aging in Normal Cognition and Alzheimer's Disease
- Lattice Brownian bees with cooperative reproduction: steady states, collapse, and spreading
- Training Ecosystems: A Computational Approach to Uncovering Learning Behavior in Unconventional Contexts
- Phylogenetic dynamics of MRCA ages and empirical moments of a Brownian trait
- Learning dynamical systems with biochemically informed neural ordinary differential equations
- Spatiotemporal remodeling of cytoskeletal and junction networks during somatic cell reprogramming
- hB-PAC: A non-invasive aging clock for quantifying individual differences in aging
- A Cross-tissue Temporal Multi-omics Atlas Reveals the Molecular Architecture of Pressure Injury
- Fatty acid metabolic interactome atlas linked to cellular longevity
- A conserved transcriptomic model defines metabolic resilience and vulnerability in obesity
- A Simulation of Semi-Infectious Particles and Genome Complementation Reproduces Interferon Response by Respiratory Epithelial Cells in vitro during Influenza A Virus Infection
- An atlas of the human metabolome
- Bayesian Parameter Balancing Enables Robust and Consistent Estimation of Kinetic Parameter Uncertainty
- A quantitative framework for bacterial competition during starvation
- Distinguishing Age-specific Patterns in Comorbidities of Obstructive Sleep Apnea Using Real-World Data
- Changes in the profile of adults diagnosed as autistic since 2010: population based studies in England and Sweden
- DNA Methylation Signatures of Atherosclerosis and Vascular-Related Outcomes in U.S. and Irish Population-Based Cohorts
- Pulse pressure thresholds associated with cognitive impairment across diverse regional and ethnic populations
- Identification of a Fractional Model for an Outbreak of the Dengue Fever
- Urban environment and socio-economic inequalities in childhood excess weight: a cross-sectional study in Geneva, Switzerland
- Maternal micronutrient deficiencies and inflammation and their associations with adverse birth outcomes: The BRINDA project
- Influenza vaccine effectiveness against pneumonia and COPD exacerbations among patients with chronic obstructive pulmonary disease in Thailand: A national test-negative design study, 2013-2024
- Functionally informed annotation influences pathway-specific polygenic risk and disease inference in Alzheimer's disease
- Mechanism Matters: A Monte Carlo Evaluation of Estimator Validity and Collider Bias in Environmental Mixture Epidemiology
- Scoring gene importance by interpreting single-cell foundation models
- EnzymeTuning improves enzyme-constrained metabolic modeling and proteome abundance prediction through deep learning
- Unveiling gene modules at Atlas scale through hierarchical clustering of single-cell data
- Asymmetric life-history trade-offs shape sex-biased longevity patterns
- Bayesian inference of haematopoietic stem/progenitor cell differentiation phenotypic manifolds and their bifurcation points using Gaussian processes and Gibbs sampling
- Tuning beta cells to the right frequency
- How is agentic AI changing how we do science?
- The metabolome of an E. coli CRISPRi library identifies benefits of minimal metabolite levels and targets for engineering
- Recurrent neural chemical reaction networks that approximate arbitrary dynamics
- TarDis: Achieving robust and structured disentanglement of multiple covariates
- Detecting changepoints in dynamical systems: Modeling time-varying transmission of seasonal influenza
- Data-driven particle dynamics: Structure-preserving coarse-graining for emergent behavior in nonequilibrium systems
- Reconstructing ancient genomes from gene counts: A robust likelihood framework with sampling bias correction
- Stable flapping flight in morphological space: Model, simulation, and explicit stability criteria
- Novel Knotted Solenoid fold with order-shifted coil arrangement leads to nontrivial 31 topology
- The effect of mutualistic interactions on diversity patterns in island biogeography
- The scaling of swimming speed
- A theoretical model for the influence of age, race and ethnicity on retinal mitochondria dysfunction
- Mathematical model of tumor-macrophage interactions: Elucidating the tumor-driven macrophage phenotype reprogramming
- Optimisation of pembrolizumab therapy for de novo metastatic MSI-H/dMMR colorectal cancer using data-driven delay integro-differential equations
- Stoichiometric constraints and cooperative hunting reshape tri-trophic food-chain dynamics and trophic transfer efficiency
- Time evolution of infection state correlation of nodes in an SIR model on a random contact network
- Dynamical analysis of heterogeneous epidemic models with discrete and continuous contact variation
- The dynamics of hepatitis B transmission with treatment and vaccination: A case study in the Ili region of Xinjiang, China, by a physics-informed neural networks approach
- Model-supported patient stratification using multi-objective synergy optimization in combination therapy
- Hierarchical recurrent temporal prediction as a model of the mammalian dorsal visual pathway
- BINSEQ: A family of high-performance binary formats for nucleotide sequences
- UNified FramewOrk for reguLatory Dynamics (UNFOLD): Dissecting robustness, plasticity, evolvability and canalisation of biological function
- Accurate computation of ionic concentrations in the synaptic cleft requires the full Poisson–Nernst–Planck (PNP) equations
- Correction: Bayesian network models to assess antimicrobial resistance patterns of Streptococcus suis isolated from swine production systems in the United States between 2014–2021
- An Analytical Framework for Phenotypic Selection of Fitness-Conferring Genes
- Methods for Analyzing RNA Pseudoknots via Chord Diagrams and Intersection Graphs
- Correction: Revisiting Turing’s Chemical Basis of Morphogenesis
- In Vitro Analysis and Dynamic Modeling of SARS-CoV-2 Infection Inhibition by Sigma-1 Receptor Antagonist PB28
- Characterization of the Killing-Rate for a Pest Control Model: The Cumulative Lethal Rate Based on Pesticide Dose-Response Relation
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- Primer: Drug discovery and patient-derived organoids
- Systems biology at the body scale: Toward adaptive digital twins in precision medicine
- Disruption of calcium homeostasis by β-amyloids: Insights from dynamical models
- Bifurcation theory and gene regulatory networks: A framework for understanding cell fate decisions in retinal regeneration
- Complex versus complicated systems biology, universality versus detailed modeling
- A hybrid framework for compartmental models enabling simulation-based inference
- Sustained oscillatory mosquito population suppression analysis based on a hybrid switching dynamical system model
- Threshold dynamics for a stage-structured model with non-local impulsive birth in a heterogeneous environment
- Consistent multiscale modelling of movement and habitat selection
- Dynamic analysis of an HIV stochastic time-delay differential equations incorporating two infection pathways and CTL immune response