Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Causal Cellular Context Transfer Learning (C3TL): An Efficient Architecture for Prediction of Unseen Perturbation Effects
- Toward Robust, Reproducible, and Widely Accessible Intracranial Language Brain-Computer Interfaces: A Comprehensive Review of Neural Mechanisms, Hardware, Algorithms, Evaluation, Clinical Pathways and Future Directions
- RXNRECer Enables Fine-grained Enzymatic Function Annotation through Active Learning and Protein Language Models
- Denoising Diffusion Variational Inference: Diffusion Models as Expressive Variational Posteriors
- Biology and Physics
- HOI-Brain: a novel multi-channel transformers framework for brain disorder diagnosis by accurately extracting signed higher-order interactions from fMRI
- MetaHQ: Harmonized, high-quality metadata annotations of public omics samples and studies
- Towards unified brain-to-text decoding across speech production and perception
- Dual-Laws Model for a theory of artificial consciousness
- SHREC: A Spectral Embedding-Based Approach for Ab-Initio Reconstruction of Helical Molecules
- Interactome mapping in human excitatory neurons reveals novel risk genes and pathways in Alzheimer's disease
- A stress-function tradeoff organizes epithelial heterogeneity across spatial scales in the human thyroid
- Alveolar-Basal Intermediates Drive Pulmonary Fibrosis via Coordination of a Pro-Fibrotic Signaling Niche in Silicosis
- 1100 Synthetic Benchmark Problems for Dynamic Modeling of Cellular Processes
- A high-throughput cost-efficient in vitro platform for the screening of immune senomodulators
- Detecting and Subtyping Ketoacidosis from Metabolomic Patterns in Forensic Casework
- A Network-Based Approach for Prioritizing Candidate Genes in Alzheimer's Disease
- Trans-acting Determinants of Gene Expression: Effects of Transcription Factor Affinity, Abundance, and Localization
- Mechanistic Modeling of Intrinsic Drug Resistance in Prostate Cancer Apoptosis Signaling
- Phase-space distance between stationary states mudulates phenotypic plasticity in breast cancer
- Frailty progression following severe infections in adults aged 65 years and above in US and England: two matched cohort studies
- Hitchhiker bias distorts symptom-based surveillance of infectious diseases
- Bias and Variance of Adjusting for Instruments
- The pitfalls of incidence-based time series regression for inferring the effects of weather on infectious diseases
- Waning Immunity and Partial Vaccination Coverage Lead to Transitions in the Source of Daily Incidence
- Pre-diagnostic lipid metabolites are enriched in men who develop advanced prostate cancer: a nested case-control study
- Sex-specific differences in nonlinear associations between glycaemia and brain health in UK Biobank
- Aldosterone after menopause: the Study of Women's Health Across the Nation
- The association between dietary diversity and depressive symptoms among adult population in rural Western Kenya
- Vascular Risk Factors, Biological Aging, and Cognitive Performance in a National Sample of Older U.S. Adults
- Author Correction: Generalizable and scalable protein stability prediction with rewired protein generative models
- EPInformer: scalable and integrative prediction of gene expression from promoter-enhancer sequences with multimodal epigenomic profiles
- Optimizing global genomic surveillance for early detection of emerging SARS-CoV-2 variants
- Efficient cosine-windowed cross-correlation for intermediate deformable image registration
- A Subphase-Labeled Mitotic Dataset for AI-powered Cell Division Analysis
- Artificial intelligence for microbiology and microbiome research
- We wait for disease to shout—What if we listened when biology whispered?
- What problem do you hope bioengineering or synthetic biology approaches will enable us to tackle in the next decade?
- The hierarchical timescale hypothesis: Functional and structural convergence of biological networks and artificial neural nets
- Generative AI for synthetic biology: Designing biological parts, circuits, and genomes
- Stretch and flow at the gliovascular interface: High-fidelity modeling of astrocyte endfeet
- Mechanical compliance enhances the impulsive energy absorption of glassy polymer films
- Operator-level quantum acceleration of non-logconcave sampling
- Strategy evolution on temporal hypergraphs
- Scaling laws for function diversity and specialization across socioeconomic and biological complex systems
- Optimal control of Alzheimer’s disease model via multi-target combination therapy
- The evolution of cooperation in the division of labor on generalized networks with a single output
- Tumor Mutational Burden Shapes Success and Resistance in Cancer Immunotherapy
- An extensive study of two-node McCulloch-pitts networks
- Short-term Bayesian influenza forecasting in a hospital environment using a linear Kalman filter
- Persistence for a class of nonautonomous systems of differential equations with unbounded delays
- Dynamical analysis of a spatially heterogeneous disease model with degenerate structure
- The impact of migration-mediated multi-threshold control strategies on disease spread of a Filippov patch epidemic model
- Sensitivity and uncertainty analyses for model of olfaction using Dempster-Shafer theory and neural networks
- Stability and bifurcation of Mpox transmission model with population heterogeneity and booster vaccination
- Live and let die: Lysis time variability and resource limitation shape lytic bacteriophage fitness
- Sub-national modelling of surveillance sensitivity to inform declaration of disease elimination: A retrospective validation against the elimination of wild poliovirus in Nigeria
- Do we need medical imaging-informed musculoskeletal models for simulations in healthy adults? A new workflow based on magnetic resonance imaging highlights the importance of personalized geometry
- CTFacTomo: Reconstructing 3D spatial structures of RNA tomography transcriptomes by collapsed tensor factorization
- An approximate-copula distribution for statistical modeling
- In Silico Comparison of Rifampicin and 25-desacetyl Rifampicin-Induced PXR-Mediated CYP450 Transcriptional Response in 3D Primary Human Hepatocytes
- Format-Preserving Reduction of Canonical Nonlinear Models
- Platelet Adhesion and Aggregation Dynamics over Collagen- and VWF-coated Surfaces: Insights from Dissipative Particle Dynamics Simulations and Microfluidic Experiments
- SSRCA: A Novel Machine Learning Pipeline to Perform Sensitivity Analysis for Agent-Based Models
- Evolutionary Dynamics at the Leading Edge of Biological Invasions
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- Primer: Drug discovery and patient-derived organoids: Primer: Innovative approaches for drug discovery
- Regime Shifts in Lakes: Observations, Models and Experiments
- Bridging Mechanism and Data: Hybrid Modeling Approaches for Cancer and Aging Research
- Regulatory out-of-equilibrium processes in cells. Part II: Spatial Heterogeneities and condensates
- Regulatory out-of-equilibrium processes in cells. Part I: Temporal Heterogeneities and Oscillations
- Extending a 1D Multi-Scale Plant Growth Model to Include Branching under Environmental and Soil Nutrient Dynamics
- Evolutionarily stable strategy in advective patchy environments
- Undesignable motifs in structural RNAs and combinatorial consequences
- Impact of network connectivity on the dynamics of populations in stream environments
- Mathematical modelling and analysis of unsteady poroelastohydrodynamics for an in-vivo type solid tumour