Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Testing quantum-like markers in neural dynamics
- Quantum AI for Cancer Diagnostic Biomarker Discovery
- DLCM: a versatile multi-level solver for heterogeneous multicellular systems
- On the Diffusion Time Evolution of Folding Chains in the Heteropolymer Model
- Fine-tuning DeepSeek-OCR-2 for Molecular Structure Recognition
- MOSAIC: Codon Harmonization of Monte Carlo-Based Simulated Annealing for Linked Codons in Heterologous Protein Expression
- An Imbalanced Dataset with Multiple Feature Representations for Studying Quality Control of Next-Generation Sequencing
- Intrinsic stochasticity in cell polarity and contact inhibition of locomotion
- Meeting times on graphs in near-cubic time
- Quantum-Like Models of Cognition and Decision Making: Open-Systems and Gorini--Kossakowski--Sudarshan--Lindblad Dynamics
- Dynamics of the end-of-life phase explained by the saturating removal model
- Asymmetric crosstalk between the BMP and TGFβ pathways resolves signaling ambiguity
- Evaluating splicing factor and kinase network crosstalk through global phosphoproteomics
- Water-mediated productivity dynamics in shifting coral reef communities
- Multimodal analysis of molecular remodeling in aging spleen identified global and cell type specific changes
- Cell-type-resolved Metabolic Flux Inference Reveals Stromal Metabolic Reprogramming Across Human Cardiomyopathies
- Conserved metabolic vulnerabilities across pathogenic coronaviruses nominate host-directed therapeutic targets
- SugarBase: mapping glycomolecule precursors in microbes
- Extreme genome reduction selectively retains modular regulatory architecture in Prochlorococcus MED4: conserved transcriptional modules reveal core physiological regulatory programs
- A Modular Machine Learning Framework for Small-Molecule Drug Repurposing Based on Organ Permeability, Target Binding, and Biomarker Modulation
- Diagnostic Delays Drive Transmission in Dense Cities: Modeling the Waiting-Window Effect and Its Mitigation
- Comparative fine-mapping of breast cancer susceptibility loci using summary statistics methods and multinomial regression
- Vaginal metabolome signatures of high-risk HPV infection trajectories in HIV-negative premenopausal women
- Do Amyloid Trajectories Reach a Physiologic Ceiling? Evidence from Iterative Approximation and Simulation
- Modeling the impact of adherence to U.S. isolation and masking guidance on SARS-CoV-2 transmission in office workplaces in 2021-2022
- The evolving epidemiology of scrub typhus in Thailand (2003-2024): insights from latent process modelling of national surveillance data
- Episia: An Open-Source Python Library for Epidemiological Surveillance, Modeling, and Biostatistics in Resource-Limited Settings
- Impact of Azithromycin Administration at Hospital Discharge on Antimicrobial Resistance and Enteropathogen Carriage 3 Months Following Treatment
- Mediation analysis in longitudinal data: an unbiased estimator for cumulative indirect effect
- Widespread genetic effect heterogeneity impacts bias and power in nonlinear Mendelian randomization
- CellNiche represents cellular microenvironments in atlas-scale spatial omics data with contrastive learning
- Using computational eye-tracking to understand individual differences in psychiatric disorders
- Predicting RNA 3D structure and conformers using a pre-trained secondary structure model and structure-aware attention
- Modulating reflexes enables speed control in simulated human walking and running
- Generative approaches to kinetic parameter inference in metabolic networks via latent space exploration
- Engineering sensor-based antithetic integral controllers for enhanced dynamic performance and noise attenuation
- The impact of package selection and versioning on single-cell RNA-seq analysis
- NOT-gated chimeric antigen receptor circuits in T and NK cells
- Constructing a holistic map of cell fate decision by hyper solution landscape
- Systemic rhythmicity of host and bacterial bile acid amidates in the mouse
- A parallel algorithm for the computation of the Jones polynomial
- Sparse identification of nonlinear dynamics and Koopman operators with Shallow Recurrent Decoder Networks
- Deep learning framework for quantifying self-organization in Myxococcus xanthus
- Fast automated adjoints for spectral PDE solvers
- Tracing the origin of tropical North Atlantic Sargassum blooms to West Africa
- Multiple adsorptions shape collective T-even phage lysis dynamics: Insights from an individual-based model
- How animal movement influences wildlife-vehicle collision risk: A mathematical framework for range-resident species
- A hybrid discrete-continuum modelling approach for the interactions of the immune system with oncolytic viral infections
- Vitamin C as a nitrosation inhibitor: A modelling study across dietary patterns and water quality
- Adaptive Dynamics models for the evolution of class-structured populations in stable systems
- Three-population connectivity scheme for inhibitory control from the locus coeruleus governing the development of power law wake bouts through early infancy
- Persistence for a class of nonautonomous systems of differential equations with unbounded delays
- Using interconnected viscoelastic elements to investigate forces and the role of cell properties during cell migration
- A minimization principle behind the diffusion bridge of diurnal fish migration
- How mathematical forms of chemotherapy and radiotherapy bias model-optimized predictions: Implications for model selection
- Phase-field modeling of border cell cluster migration in Drosophila
- Enhancing generalizability of model discovery across parameter space with multi-experiment equation learning for biological systems
- Sharing the spotlight: Uncovering common attentional dynamics across species
- DMAPLM: A multimodal pretrained framework for computational drug repositioning
- Spatio–temporal modelling of in vitro influenza A virus infection: The impact of defective interfering particles on the type I interferon response
- Statistical and Structural Bias in Birth-Death Models
- Stochastic Analysis of Taxis and Kinesis Properties of Colonial Protozoa
- A Mathematical Model for Smooth Muscle Cell Phenotype Switching In Atherosclerotic Plaque
- Macrophage Polarization Determines Inflammation Amplification and Resolution
- Vascular-Coupled Modeling of Treatment Resistance in Tyrosine Kinase Inhibitor Therapy: Parameter Estimation and Phase-Dependent Sensitivity Analysis
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- Primer: Drug discovery and patient-derived organoids
- Complex versus complicated systems biology, universality versus detailed modeling
- Simple systems, complex dynamics: Lessons from minimal gene regulatory networks
- Toward a systems view of life’s origins: Modeling the emergence of complexity across chemical, informational and ecological levels
- Intercellular coupling and synchronization of circadian clocks: Theoretical insights and experimental perspectives
- Spatiotemporal dynamics of HIV in the Brain: perspective of mathematical modeling for its control via antiretroviral therapy
- Spatio-temporal pattern formation under varying functional response parametrizations
- Evolution of a trait distributed over a large fragmented population: propagation of chaos meets adaptive dynamics
- Effects of host migration and travel loss on strain competition in a two-patch SIR model
- A predator-prey model with age-structured role reversal