Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Emergence of generic first-passage time distributions for large Markovian networks
- Black Hole-Inspired Horizon Model for Neural Signal Dynamics
- DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA
- Enhancing generalizability of model discovery across parameter space with multi-experiment equation learning (ME-EQL)
- HD-Bind: Encoding of Molecular Structure with Low Precision, Hyperdimensional Binary Representations
- An epidemiological model with waning immunity and reinfection
- Modelling SARS-CoV-2 epidemics via compartmental and cellular automaton SEIRS model with temporal immunity and vaccination
- Central Dogma Transformer III: Interpretable AI Across DNA, RNA, and Protein
- SynLeaF: A Dual-Stage Multimodal Fusion Framework for Synthetic Lethality Prediction Across Pan- and Single-Cancer Contexts
- Subspace Tensor Orthogonal Rotation Model (STORM) for Batch Alignment, Cell Type Deconvolution, and Gene Imputation in Spatial Transcriptomic Data
- Systems-level longitudinal immune profiling reveals individualized immunotypes and genetic associations
- GlycoDiveR: a modular R framework to analyze and visualize highly dimensional glycoproteomics data
- Cross-Species Translation Enhances the Use of Mouse Models for Translatability and Drug Discovery in Late-Onset Alzheimer's Disease
- Modeling the Role of Platelet-Released Polyphosphates in Tissue-Factor-Initiated Coagulation under Flow
- Integrating metagenome-scale metabolic modelling and metabolomics to identify biochemical interactions in Microcystis phycospheres
- A graph-based learning approach to predict the effects of gene perturbations on molecular phenotypes
- FASTERCC: Accelerating Flux Consistency Testing and Context-Specific Reconstruction for Large-Scale Metabolic Network Models
- X-Cell: Scaling Causal Perturbation Prediction Across Diverse Cellular Contexts via Diffusion Language Models
- Circulating miRNA-Protein Signatures Predict Outcomes in Pediatric Dilated Cardiomyopathy
- Stochastic optimal control simulations of walking: potential and perspective
- Life Course Socioeconomic Position and health in older adulthood age: A Formal Mediation Analysis in the 1958 British Birth Cohort
- Leveraging perturbations to infer the population dynamics of human rhinovirus and interaction of influenza A virus
- Beyond COVID-19 Deaths: Cause-Specific Analysis of Excess Mortality in Russia
- Modification of temperature-morbidity associations by social determinants of health
- Higher omega-3 DHA-plasmalogen phospholipid levels across early life mediate the benefits of maternal healthy diet and breastfeeding on infant neurocognition
- Quality Control during the Dengue Virus Epidemic of 2024: A Multivariate Approach for Molecular Biology Diagnostics in a Multicenter Study
- Health Status of Puerto Rican Youth in the Island: Key Cardiometabolic and Mental Health Aspects
- Integrating Lung Tissue-based Transcriptome-Wide Association Study with Single-cell RNA-sequencing Uncovers Susceptibility Genes and Cell Types Underlying Lung Cancer Risk
- Mapping global emergence of pathogens with epidemic and pandemic potential to inform and accelerate pandemic prevention, preparedness, readiness and response
- Predictive and Seasonal Dynamics of the Human Wastewater Virome
- Post-pandemic changes in population immunity have reduced the likelihood of emergence of zoonotic coronaviruses
- AI-based chest X-ray prioritization in the lung cancer diagnostic pathway: the LungIMPACT randomized controlled trial
- Generating 3D models of complex carbohydrates with GLYCAM-Web
- Self-reorganization and information transfer in large-scale models of fish schools
- Interpretability and implicit model semantics in biomedicine and deep learning
- Antithetic integral feedback control redesigned for improved dynamics and lower noise
- Haplotype-resolved reconstruction and functional interrogation of cancer karyotypes
- Fast, long-range intercellular signal propagation through growth-assisted positive feedback
- Competition and compromise between exogenous probiotics and native microbiota
- Dynamics of genetic circuits in Pseudomonas protegens
- On the optimal integration of intelligent agents into network systems to steer cooperation
- Stretch and flow at the gliovascular interface: High-fidelity modeling of astrocyte endfeet
- Mechanical compliance enhances the impulsive energy absorption of glassy polymer films
- Operator-level quantum acceleration of non-logconcave sampling
- Strategy evolution on temporal hypergraphs
- Stochastic eco-evolutionary dynamics of multivariate traits: A framework for modeling population processes illustrated by the study of drifting -matrices
- Effects of insecticides and awareness on the dynamics of a delayed malaria model: A real-data calibration
- A computational study of adiposity-associated factors in the inflammatory process of osteoarthritis
- Editorial: Improving pandemic and epidemic responses - novel methods and lessons learned from previous infectious disease outbreaks
- Global metabolic coherence as a derived property of microbial communities: A discrete hodge framework
- Persistence for a class of nonautonomous systems of differential equations with unbounded delays
- How generalist predation shapes a predator-prey model: A bifurcation analysis
- Oncolytic viral therapy under type I interferon regulation: Mathematical modeling and analysis
- Stability analysis of a novel HIV model with CTL immune response, latency age, infection age and a saturated infection rate
- Genuine and spurious bistability in a simple epidemic model with waning immunity
- A minimal mathematical model of red blood cell homeostasis in anemia
- HiCMamba: Enhancing Hi-C resolution and identifying 3D genome structures with state space modeling
- MPCI: A novel metric for quantifying DNA methylation patterns in NGS data
- PepLM-GNN: A graph neural network framework leveraging pre-trained language models for peptide-protein binding prediction
- A multimodal spatial atlas of transcriptomic, morphological, and electrophysiological cell type densities in the mouse brain
- The Role of Viral Dynamics and Infectivity in Models of Oncolytic Virotherapy for Tumours with Different Motility
- Integrating Mechanistic Modeling and Machine Learning to Study CD4+/CD8+ CAR-T Cell Dynamics with Tumor Antigen Regulation
- Emergence of Bursting and Delay-Induced Spiral Patterns in Eco-Epidemiological Systems
- Modelling and Simulation of Collective Cell Migration with Non-Local Interactions on Time-Dependent Spatial Domains
- Final-Size Solutions for SIRI Models with Vaccination
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- Simple systems, complex dynamics: lessons from minimal gene regulatory networks
- Toward a systems view of life’s origins: Modeling the emergence of complexity across chemical, informational and ecological levels
- Intercellular coupling and synchronization of circadian clocks: Theoretical insights and experimental perspectives
- Carleman-linearized epidemic models as a route to a data-driven algebraic estimate of the effective reproduction number
- Understanding the temperature response of biological systems: Part II - Network-level mechanisms and emergent dynamics
- Mathematical dissection of tumor phenotypic heterogeneity in a spatial data-informed nonlocal reaction-diffusion model
- Order-Dependent dissimilarity measures on phylogenetic trees
- Derivations of animal movement models with accumulated memory
- Rate-induced tipping in a lake eutrophication model coupled with human activities
- Extending a 1D Multi-Scale Plant Growth Model to Include Branching under Environmental and Soil Nutrient Dynamics