Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- HyperNetWalk: A Unified Framework for Personalized and Cohort-Level Cancer Driver Gene Identification via Reverse Inference on Layered Signaling-Regulatory Network
- Friend or Foe
- Likelihood-free inference of phylogenetic tree posterior distributions
- Deep probabilistic model synthesis enables unified modeling of whole-brain neural activity across individual subjects
- Data-Efficient Multimodal Alignment for Histopathology-based Molecular Prediction
- A structural causal framework for interventions on evolutionary accumulation models
- Spike-frequency and h-current based adaptation are dynamically equivalent in a Wilson-Cowan field model
- Manganese-Functionalized GelMA Hydrogels for MRI-Guided Immunotheranostics in Precision Oncology
- Geometric Stability of Neural Population Codes: Regional Variation, Behavioral Relevance, and Circuit Dependence
- Democapsid
- Receptor-structured modelling of EGFR-driven tumor initiation: from spatially resolved cell-based simulations to reduced population dynamics
- Intricate Dynamical Cross-Talk Between p53 Protein and Cell Cycle Regulators Governs Mammalian Cell Fate
- Reductive carboxylation via isocitrate dehydrogenase 1 supports cardiac metabolic adaptation during oncometabolic stress.
- Comparative Evaluation of DDA and DIA Based Proteomic Workflows in Beryllium Related Lung Disease
- Antifungal tolerance and resistance dynamics depend on infection load, drug treatment, and host innate immunity
- Purinergic signaling disrupts emergent patterns of multicellular coordination in basal Xenobots.
- PRIME: scalable, robust inference of mechanistic cell states from multimodal single-cell counts via probability generating functions
- Untargeted cord blood metabolomics reveals altered lipid metabolism in neonates with gastroschisis
- Organizing principles in the Nitrogen-Carbon Landscape of Marine Heterotrophic Bacteria
- Cellular Complexity and Systemic Immune Profiles across Ancestral Diversity in Thailand and Mainland Southeast Asia
- Spatial structure and demographic decoupling of chikungunya transmission and severity in Brazil, 2015 to 2025
- Application of the Health Belief Model using the PRECEDE-PROCEED framework for community-based hypertension control in rural Bangladesh: a cluster randomized trial protocol
- A study protocol for the project Meeqqat Peqqissut: A register-based study exploring social and health determinants of child well-being in Kalaallit Nunaat (Greenland).
- Race and Socioeconomic Status Impact Survival from Early and Late-Onset Colorectal Cancer
- Biofilm Contributions of Bacterial Pathogens and Antimicrobial Resistance Genes to Wastewater Surveillance Signal at the Hospital Scale
- A new approach using proxy event in prior event rate ratio for terminal event studies
- Mixed-Frequency Regression Model for Short-Term Environmental Exposure-Response Modelling: A Simulation Study
- Trends, Rural-Urban Inequalities and Forecasts of Open Defecation in Ghana Using Joinpoint Regression and ARIMA Analysis, 2000-2030
- The association between type 2 diabetes disease trajectories and dementia incidence
- Emergence and co-circulation of Monkeypox virus Clade Ia and Clade Ib in South Kivu, Democratic Republic of the Congo, January to May 2026
- Enhancing molecular property prediction of transformer models with dual graph representation
- Adaptive Learning Platform for Dyslexic Students
- Network-driven discovery of repurposable drugs targeting hallmarks of aging
- Advancing fair and explainable machine learning for neuroimaging dementia pattern classification in multi-racial and multi-ethnic populations
- PlanarFold: a coarse-grained molecular dynamics model of RNA in two-dimensional space
- Phased variability in cell fate determination orchestrates antibody evolution
- Immune BioGraphy: A tale of graphical approaches in systems and virtual immunology
- Transcriptional competition biases the effects of second messengers in Escherichia coli
- Dango: Predicting higher-order genetic interactions
- Fusing imaging and metabolic modeling via multimodal deep learning in ovarian cancer
- Daring few, patient many: Division of labor in decentralized foraging collectives
- Modeling framework to demonstrate elimination of a vector population: Tsetse elimination in Chad
- Spatial and temporal prediction of Aedes aegypti populations with atmospheric and urban forms dependence
- Mathematical modeling of JAK2V617F clonal expansion in a general population cohort
- Correction for Zhang et al., Deep learning framework for quantifying self-organization in Myxococcus xanthus
- Collective dynamics and synchronization of coupled hair-bundle models with elastic and viscous interactions
- Varying parameter ranges alters both partial rank correlation coefficient results and phenomenological behavior when modeling the epithelial mesenchymal transition
- Adaptive social distancing under variant-specific transmission dynamics in a spatial SEIIR model with reinforcement learning
- Long-range interaction of multi-spiral cAMP waves in Dictyostelium discoideum amoeba aggregation
- A physiologically based mathematical model describing estradiol and progesterone actions on glucose-insulin dynamics throughout the menstrual cycle
- Modeling and analysis of the effect of dissolved oxygen on the dynamics of Plankton system in shallow lakes
- Simultaneous parameter and function discovery in differential equations using physics-informed neural networks
- Global dynamics of an intraguild predation predator–prey model with density-dependent velocity suppression
- Impacts of cooperative hunting and Allee effect on the dynamics of a three-species system with sexually reproducing top predators
- Optimal experiment design for practical parameter identifiability and model discrimination
- GHF-ACL: A novel contrastive learning framework with multi-order graph structures for herb-disease association prediction
- GATE: Adaptive learning with working memory by information gating in multi-lamellar hippocampal formation
- Neuronal excitability and parameter variability in the Hodgkin-Huxley model
- Delayed reward information is underweighted in reinforcement learning with dispersed feedback
- Systematic design of auxotrophic strains and media conditions to probe metabolic functions in E. coli
- CBINN: Cancer Biology-Informed Neural Network for Unknown Parameter Estimation and Missing Physics Identification
- A Cost-Sensitive Behavioral Modeling Analysis of the Early Identification and Control of Infectious Diseases
- The Exact Hypergeometric Posterior Method for Accurate Inference of Population Size from Mark–Recapture Data
- Tracking Dynamics of Superspreading Through Contacts, Exposures, and Transmissions in Edge-Based Network Epidemics
- Topological Structure of Epigenetic Forests in Flower Morphogenesis
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- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- A dialog between cell adhesion and topology at the core of morphogenesis
- Computational models of cellular bioenergetics indicate the role of Ca2+-regulated pyruvate dehydrogenase in metabolic remodeling
- Dynamics of cell fate patterning in discrete multicellular systems
- Primer: Drug discovery and patient-derived organoids
- Phenotypic plasticity trade-offs in an age-structured model of bacterial growth under stress
- Correction to: Superinfection and the hypnozoite reservoir for Plasmodium vivax: a general framework
- Superinfection and the hypnozoite reservoir for Plasmodium vivax: a multitype branching process approximation
- A two-species competition model on a compact metric graph for the invasion and competition of Aedes Aegypti and Aedes Albopictus mosquitoes in Florida
- Intraspecific interactions facilitate mutualism across multilayer networks under weak selection