Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Tricriticality and chaos in a generalized Allee-logistic map
- rsx: A high-performance streaming toolkit for RAD-seq sex determination
- Multimarginal flow matching with optimal transport potentials
- Uniform sampling of canalizing Boolean functions reveals hidden biases in Boolean network analysis
- Intrinsic Computational Functionalism: From Observer-Relative Maps to Observer-Independent Structures
- HEIST: A Graph Foundation Model for Spatial Transcriptomics and Proteomics Data
- Amplification at Equilibrium: Structural and Thermodynamic Limitations, and Implementation
- Cross-scale spatially-aware generative modeling of transcriptomic programs underlying neurodegenerative brain organization
- Federated SPARQL querying for genomic variant functional annotation
- Quantifying the biophysical properties of stomatocytes in health and disease
- RISOP, a Reference-Assisted Approach for Enhanced Identification of Oxidized Phospholipids
- Diversity, host-specificity, and environmental drivers of the coral reef eukaryome
- Multi-omic data fusion reveals the in vivo enzyme kinetics of Vibrio natriegens at the genome-scale
- Human Genome-Scale Models of Metabolism and Gene Expression Reveal Resource Constraints of Cancer Cell Lines
- TabularQual: A spreadsheet-based format for annotating and curating logical models in SBML-qual
- Model-based inference of enzyme inhibitions from perturbation-induced metabolic dynamics
- A multimodal perturbation atlas defines the phenotypic resolution of cellular morphology.
- Development positions malignant cellular states but does notexplain their diversification
- Extracellular vesicles from Manila clam (Ruditapes philippinarum): tailored isolation from hemolymph and insights into water-derived vesicles
- iSsus3744: A Genome-Scale Model-Guided Strategy for Rational Media Design for Cultivated Pork
- KESOZI Digital Twin: Physics-Informed Neural Network for Independent Estimation and Prediction of Childhood Diarrheal Disease Burden in Kenya, Somaliland, and Zimbabwe
- A New Mixed Frequency Regression Model For Environmental Epidemiology
- Serum Cotinine and Wrist-Worn Ambient Light Exposure Patterns in U.S. Adults: A Cross-Sectional Analysis of NHANES 2011-2014
- Arts and Cultural Engagement and Multidimensional Well-being in Later Life
- Compositional microbiome-based signatures associate with general health status: findings from a large population-based cohort study
- Insights from Wastewater Surveillance of SARS-CoV-2 in Skilled Nursing Facilities: Comparing Virus Concentration Methods for Wastewater and Correlating Wastewater Virus Concentrations with Clinical Infections, Georgia, USA, 2022
- Development of Longitudinal, Linked Maternal-Infant Cohorts using the Epic Cosmos Electronic Health Record Dataset
- Cardiometabolic Risk and Diagnostic-Laboratory Reference-Range Disagreement in 794,811 Indian Insurance Applicants
- Prevalence, Genetic Diversity, and Landscape Associations of Orthohantavirus puumalaense in Bank Voles (Clethrionomys glareolus) from Northern Sweden
- Neighborhood Deprivation and Racial Disparities in Metastatic Prostate Cancer at Diagnosis: A Population-Based Study in Ohio
- Explicit dynamic cross-strand interactions for DNA sequence language modelling
- Inference of spatial chromatin accessibility via integration of spatial transcriptomics and single-cell multi-omics data
- Flipping antimicrobial peptides in the exit tunnel of the bacterial ribosome
- scMEDAL: interpretable single-cell transcriptomics analysis with batch effect visualization via deep mixed-effects autoencoder
- Conditional Monge Gap enables generalizable single-cell perturbation modelling
- Tuning beta cells to the right frequency
- How is agentic AI changing how we do science?
- The metabolome of an E. coli CRISPRi library identifies benefits of minimal metabolite levels and targets for engineering
- Recurrent neural chemical reaction networks that approximate arbitrary dynamics
- TarDis: Achieving robust and structured disentanglement of multiple covariates
- Mean field game model of the impact of reductions in support on faculty research activity
- Symmetry-breaking thermomagnetic dynamics of ferrofluid: Oscillation, spontaneous rotation, and flow bistability under laser irradiation
- What leads to administrative bloat? A dynamic model of administrative cost and waste
- Traveling waves in a continuum model of schooling swimmers
- Detecting changepoints in dynamical systems: Modeling time-varying transmission of seasonal influenza
- Managed-bee supplementation may drive parasite-mediated exclusion of wild bees
- A model of STAT1-p53 coordination: Regulating p21 and PUMA to program cell fate under stress
- The effect of mutualistic interactions on diversity patterns in island biogeography
- The scaling of swimming speed
- A theoretical model for the influence of age, race and ethnicity on retinal mitochondria dysfunction
- Anthropogenic noise reshapes community stability by disrupting parental care-mediated trophic feedbacks
- Dynamics in an almost periodic metapopulation with competition and habitat destruction: An exponential dichotomy based approach
- A general class of bounded diffusion processes with applications in the biosciences
- Reshaping transmission and recovery: How memory effects govern global dynamics thresholds in the SIR model
- Juvenile-adult asymmetry in species interactions and risk-taking behavior: mechanisms governing population stability
- Predictive modeling in biology and medicine: Digital twins and multi-scale modeling
- Cell differentiation can underpin the reproducibility of morphogenesis
- CIPHER: An end-to-end framework for designing optimized aggregated spatial transcriptomics experiments
- IsoPepTracker: An interactive web application for peptide-driven isoform analysis
- Linking reduced prefrontal microcircuit inhibition in schizophrenia to EEG biomarkers in silico
- Integrating Mathematical Modeling and Oncology: An Improvised Collocation Approach for Prediction of Chemotherapy Response
- Sustainable Coexistence with Infectious Diseases: A Behavioral Feedback Model Driven by Resource Accessibility under Static-Dynamic Optimal Control
- A Tutorial on Structural Identifiability of Epidemic Models Using StructuralIdentifiability.jl
- Channel Transport: Gating, Geometry, and Heterogeneous Diffusion
- Methods for Analyzing RNA Pseudoknots via Chord Diagrams and Intersection Graphs
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- A dialog between cell adhesion and topology at the core of morphogenesis
- Computational models of cellular bioenergetics indicate the role of Ca2+-regulated pyruvate dehydrogenase in metabolic remodeling
- Dynamics of cell fate patterning in discrete multicellular systems
- Primer: Drug discovery and patient-derived organoids
- Systems biology at the body scale: Toward adaptive digital twins in precision medicine
- Modelling the effect of antibody depletion for dose-response behavior of common immunostaining protocols
- Transient tumor-induced disruption of peristaltic flow: a magnetohydrodynamic modeling framework
- Stochastic modelling and statistical inference for the time to extinction of a class of populations with sexual reproduction
- A framework for jointly modeling the natural history of ductal carcinoma in situ and invasive breast cancer
- A hybrid framework for compartmental models enabling simulation-based inference