Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.

- Intestinal villi and crypt density robustly maximizes nutrient absorption
- A neural-astrocyte architecture implements a hybrid automaton for evidence accumulation
- Graphlets as structural fingerprints of complex networks
- Subject-Specific Analysis of Self-Initiated Attention Shifts from EEG with Controlled Internal and External Attention Conditions
- Task- and dataset-specific information in protein language models
- GrassTop: Grassmannian k-mer Topology for Viral Classification and Phylogenetic Analysis
- Equivalence of approximation by networks of single- and multi-spike neurons
- Anomalous First Passage in Evolution: Edge-KPZ Theory
- Graph construction in QUBO-based recursive phylogenetic tree reconstruction
- Predictor Construction Can Reverse Multimodal Neural Contrasts

- The impacts of exogenous noise on stochastic disease dynamics
- Multi-omics reveals a monocyte-macrophage-fibroblast axis in post-COVID-19 fibroinflammatory lung remodelling
- Competing constraints on protein availability and nutrient uptake reshape yeast genetic interactions
- Site-resolved spatial and structural interactome of a human cell
- Sensory variation and behavioural degeneracy: a framework for interpreting heterogeneity in the gut-brain axis
- A massively parallel synthetic gene atlas for learning compact cis-regulatory grammar across cellular contexts
- Single-cell proteomics reveals cell-type-specific functional coordination in PBMCs
- DiffDose: Differentiable Programming for Personalized Dose-Regimen Optimal Control
- A single-cell view of human tissue aging reveals architectural decline beyond cellular composition
- A transitional senescence program drives inflammatory monocyte state expansion in aging humans

- Late Life Learning, Cognition, and Aging: A Longitudinal study of middle and older-aged adults in Beirut, Lebanon (3LC study)
- Plasma Proteomic Mediators of the Association Between Early-Pregnancy Psychosocial Stress and Cardiovascular Health 2 to 7 Years After Delivery: The nuMoM2b-HHS Study
- Moderate-to-vigorous physical activity, age-dependent adiposity, and obesity risk in older adults at high cardiovascular risk
- Effectiveness of 2025 bi-annual COVID-19 vaccination campaigns against hospitalisation in England
- Impact of Social Determinants of Health in Early Pregnancy on Racial and Ethnic Differences in Post-pregnancy Cardiovascular Health
- Epidemiology of Shigella sonnei and Shigella flexneri in the Global Pediatric Diarrhea Surveillance network, 2017-2022
- Snakebite prevalence, burden, healthcare-seeking behavior, and climate change awareness: a cross-sectional household survey in rural Gulu District, northern Uganda
- Structural, functional, and quality aspects of social connections and their associations with anthropometric, cardiovascular, and metabolic markers of health in Understanding Society
- Predicting and Explaining WASH Inequities in Nigeria A Machine Learning Approach to Accelerate NTD Elimination
- Global trends and vaccine-associated changes in meningitis burden, 2000-2023: a multi-country ecological panel study

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- Correction for Zhang et al., Reconstructing the early spatial spread of pandemic respiratory viruses in the United States
- Uncovering dynamic human brain phase coherence networks
- Stochasticity and probabilistic trajectory scoring are essential for data-driven closures of chaotic systems
- Group size effects and collective misalignment in LLM multi-agent systems
- Modeling infodemics on a global scale: A 30 countries study using epidemiological and social listening data

- A theoretical model for optimal fluid maintenance in clinical dengue patients
- Mechanisms accounting for Allee effects during HIV-1 infection
- Bridging two theoretical frameworks of autocatalysis: RAF sets and stoichiometric autocatalysis
- A stochastic agent-based model for naive CD8+ T cell recirculation dynamics in mice
- A revised ribosome–antibiotic model with proportional feedback synthesis explains recovery from translation inhibition

- Mathematical modeling of age-structured viral infections: Integrating virus-to-cell and direct cell transmission
- Thresholds for stochastic SIRS with switching exponents
- Modeling tumor-immune interactions with hyper-allee effects: Formulation, stability, and bifurcation analysis
- Mutant p53 gain-of-function and immune suppression: Mathematical modeling of STING–TBK1–IRF3 axis restoration for enhanced cancer therapy
- Threshold dynamics of the hydra and hormetic effects in a discrete population model

- Correction: Quantifying the spatiotemporal dynamics of the first two epidemic waves of SARS-CoV-2 infections in the United States
- Synchronization properties in C. elegans: Relating behavioral circuits to structural and functional neuronal connectivity
- Ten quick tips for spatial transcriptomics analysis
- Quantification of beta-cell carrying capacity in prediabetes
- Inferring effective neuronal circuits via network flux counting

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- The evolution of standards in systems biology: From metabolic and multi-scale to whole-cell models
- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- Amniote gastrulation in silico
- A dialog between cell adhesion and topology at the core of morphogenesis

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