Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
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- Acetate promotes nutritional adaptation in Escherichia coli
- COCOA.jl: A Julia package for high-performance analysis of concordance and kinetic modules in biochemical networks
- A unified framework links infant vulnerability with aging-related mortality dynamics
- Mathematical Modeling of the Canonical Aryl Hydrocarbon Receptor Pathway
- Ensemble kinetic modelling links residual enzyme activity to clinical symptoms in mitochondrial β-oxidation defects
- Inter- and Intra-individual Variability in Oral Food Processing and Its Impact on Aroma Release
- Scalable longitudinal imaging and transcriptomics of cells in dynamic enclosures
- Robotic perturbation proteomics and AI agents enable scalable drug mechanism discovery
- Multi-omic analysis identifies mitochondrial dysfunction as a conserved driver of acute severity and long-term complications in RSV infection
- REDUCED-PRECISION STOCHASTIC SIMULATION FOR MATHEMATICAL BIOLOGY
- Simpler is not always better: Phylodynamic misspecification and deep-learning corrections
- A literature scanning and prioritization framework to guide future systematic reviews for World Cancer Research Fund International's Global Cancer Update Programme
- Biomarker Panel Selection Explains Heterogeneity in Allostatic Load-Mortality Risk: A Specification-Curve Analysis
- Transdisciplinary Epidemiology in Schools: Integrating Molecular Environmental and Social Surveillance Through Community Science
- Determinants and long-term outcomes of COVID-19 undervaccination: a cohort study of 6.8 million individuals in Lombardy, Italy
- Longitudinal cross-species transmission of microbiomes and resistomes across farmers, animals and environment
- Seroprevalence and Trends of Transfusion-Transmissible Infections Among Blood Donors in the Volta Region, Ghana: A Four-Year Retrospective Study
- Epigenetic age acceleration in offspring linked to paternal smoking initiation and overweight in puberty: Evidence from a two-generation study
- Identifying the determinants of health protective behaviors during the COVID-19 pandemic using machine learning: an analysis of six countries
- The "Involution" Penalty: Why Objective Wealth Fails to Protect Mental Health Without Subjective Status Perception in China
- Learning brain dynamics across distinct scaling regimes reveals psychiatric signatures
- SCOTCH: isoform-level characterization of gene expression through long-read single-cell RNA sequencing
- CAPTAIN: a multimodal foundation model pretrained on co-assayed single-cell RNA and protein
- Reusability report: Meta-learning for antigen-specific T cell receptor binder identification
- Charting spatial ligand-target activity using Renoir
- Engineering sensor-based antithetic integral controllers for enhanced dynamic performance and noise attenuation
- The impact of package selection and versioning on single-cell RNA-seq analysis
- NOT-gated chimeric antigen receptor circuits in T and NK cells
- Constructing a holistic map of cell fate decision by hyper solution landscape
- Systemic rhythmicity of host and bacterial bile acid amidates in the mouse
- Stable flapping flight in morphological space: Model, simulation, and explicit stability criteria
- Novel Knotted Solenoid fold with order-shifted coil arrangement leads to nontrivial 31 topology
- A parallel algorithm for the computation of the Jones polynomial
- Sparse identification of nonlinear dynamics and Koopman operators with Shallow Recurrent Decoder Networks
- Deep learning framework for quantifying self-organization in Myxococcus xanthus
- The ideal free distribution in temporally varying environments
- The role of antibody-mediated immunity in shaping the seasonality of respiratory viruses
- Theoretical origins of extreme cell differentiation irreversibility in volvocine algae: A dynamic model of organismal size effects
- An analytically tractable framework for transcription–extrusion coupling in chromatin loop formation
- How do foragers use nonlocal information? A novel modeling framework
- Spatial pattern regulation in pine wilt disease models with feedback mechanisms
- A potential surrogate model for efficient inference of stochastic GLUT4 translocation
- When simple is enough: Binary models capture social complexity in coupled human-environment systems
- Parameterisation of epidemiological models from small field experiments: A case study of banana bunchy top virus transmission
- A sharp dichotomy for Wolbachia invasion: Critical release thresholds and global stability
- Distilling noise characteristics and prior expectations in multisensory causal inference
- Limited ‘heft’ of weight-based outcomes in predicting influenza A virus disease severity in ferrets
- RNAprecis: Prediction of full-detail RNA conformation from the experimentally best-observed sparse parameters
- The ecology and evolution of sub-exponential replicators
- Modeling individual self-protective behavior during epidemics
- From Trait-Structured Within-Host Dynamics to SIR Models: A Multiscale Framework With Re-Exposure
- Observer-Based Source Localization in Tree Infection Networks via Laplace Transforms
- Analysis of the Modulation of RAF Signaling by 14-3-3 Proteins
- Statistical and Structural Bias in Birth-Death Models
- Stochastic Analysis of Taxis and Kinesis Properties of Colonial Protozoa
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- Primer: Drug discovery and patient-derived organoids
- Bifurcation theory and gene regulatory networks: A framework for understanding cell fate decisions in retinal regeneration
- Complex versus complicated systems biology, universality versus detailed modeling
- Simple systems, complex dynamics: Lessons from minimal gene regulatory networks
- Toward a systems view of life’s origins: Modeling the emergence of complexity across chemical, informational and ecological levels
- Why is it easier to predict the epidemic curve than to reconstruct the underlying contact network?
- Unravelling the spatiotemporal dynamics of amyloid-$$\beta $$–induced astrocyte–neuron network model in Alzheimer’s disease
- Stability and Self-Organized Patterns in Coupled Ecohydrological–Fire Dynamics: A Model of Vegetation–Rainfall–Bushfire Interactions
- Threshold dynamics of a HBV infection model with degenerate diffusion, DNA-containing capsids and time-delays in heterogeneous environment
- On learning functions over biological sequence space: relating Gaussian process priors, regularization, and gauge fixing