Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.

- Early psychosis shows deviations in scaling behaviour within a critical regime
- A Gradient-based yet Spike-Timing-Dependent Solution to the Feedback Learning Problem in Neural Microcircuits
- On the formulation and analysis of a stage-structured eco-evolutionary model with pulsed disturbances
- Parameter Identification in Reaction-Diffusion-Chemotaxis Systems from Single Turing Pattern Amplitudes
- Hierarchical Expansion of Finite Discrete Dynamical Systems: A Non-Archimedean Variational Theory over Coordinate Orderings
- Orchestra: Corroboration-Based Regulatory Candidate Discovery via Composed Bioinformatics MCP Agents
- DNA: Differentially private Neural Augmentation for contact tracing
- Degeneracy along the sensorimotor hierarchy: motor control within a framework larger than redundancy
- pyAvalanches: A Python Package for Analyzing Spatiotemporal Propagation in Neuronal Avalanches
- Discovering Subtypes of Neurodegenerative Progression with a Scalable Connectome-Constrained Dynamic Model

- The Principal Component Life Trajectory (PCLT): Mapping Sex-Specific Physiological Change Across the Human Lifespan
- Data-driven multiscale modeling deciphers MOI-dependent dual antiviral mechanisms of OP7
- Multi-omic dissection of reversible and persistent molecular alterations in diet-induced obesity
- Integrating Narrow-Window DIA with AI-Powered Search Enables Deep and Reliable Functional Proteomics
- Stable epigenetic states set single-cell activation thresholds in mammalian expression systems
- Selectively Advantageous Instability and Information Theory in Sex-specific Aging
- Electrical Stunning does not affect Brain Tissue Integrity and Stress Response in Larval Zebrafish
- Simulations predict that alterations in balance control contribute to the higher cost of walking with a prosthesis
- A signaling network motif couples protein expression levels and intracellular localization
- Net conversion calculations of catabolic pathways

- Working conditions, security and grievance management among Bundibugyo virus response personnel: exploratory findings from an anonymous survey in eastern Democratic Republic of the Congo
- Wastewater Metagenomic Virome Analysis of the 2026 World Cup in Texas
- Discovery and Validation of Gut Microbiome Features Associated with Dietary Patterns in U.S. Black/African and Hispanic/Latino Populations
- Disagapp: A Shiny app to facilitate reproducible disaggregation regression analyses
- Circulating Inflammatory Markers and Mammographic Density Phenotypes: a Mendelian Randomization Analysis
- Childhood Anemia and Maternal Media Exposure in Sub-Saharan Africa: A Multi-Country Cross-Sectional Analysis Across Ghana, Nigeria, and Tanzania
- Socioeconomic status, healthcare access, and risk of atrial fibrillation: an investigation using the Jackson Heart Study Research Materials
- Motor neuron disease in rural Australia: a population-based observational study of epidemiology, clinical characteristics and regional variation
- Genetic liability to ADHD and migraine risk: Mendelian randomization evidence for behavioural and psychiatric pathways
- Fragmented criticality of infectious disease epidemics

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- Mechanical feedback drives fractal airway organization
- Beyond differential expression: Differential variability as an underappreciated axis in transcriptomics
- The emergence of the fractal bronchial tree
- High-throughput DNA engineering by mating bacteria
- A data-driven modeling framework for mapping genotypes to synthetic microbial community functions

- Correction for Zhang et al., Reconstructing the early spatial spread of pandemic respiratory viruses in the United States
- Uncovering dynamic human brain phase coherence networks
- Stochasticity and probabilistic trajectory scoring are essential for data-driven closures of chaotic systems
- Group size effects and collective misalignment in LLM multi-agent systems
- Many-eyes and sentinels in selfish and cooperative groups

- A theoretical model for optimal fluid maintenance in clinical dengue patients
- Mechanisms accounting for Allee effects during HIV-1 infection
- Bridging two theoretical frameworks of autocatalysis: RAF sets and stoichiometric autocatalysis
- A stochastic agent-based model for naive CD8+ T cell recirculation dynamics in mice
- A revised ribosome–antibiotic model with proportional feedback synthesis explains recovery from translation inhibition

- Parametric sensitivities of a nonsmooth Wilson-Cowan model with a comparison to its smooth counterpart
- Permanent charge effects on current-voltage relations via classical Poisson-Nernst-Planck systems under relaxed electroneutrality boundary conditions
- Perspective: Allee effects in theory and reality
- Hybrid mechanistic-machine learning models in biosciences: Causality, forecasting, and lab-to-field translation
- Logistic gene regulatory networks: A modeling framework beyond Hill functions

- Ecological specialization in vectors alters transmission thresholds and endemic dynamics in multi-host, multi-vector systems
- Leveraging perturbations to infer the population dynamics of human rhinovirus and interaction of influenza A virus
- Analysis of multicellular anatomical structures from spatial omics data using sosta
- AET5: A transcriptome-guided molecular generation framework with contrastive self-supervised learning
- A real-time forecasting framework for emerging infectious diseases affecting animal populations

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- The evolution of standards in systems biology: From metabolic and multi-scale to whole-cell models
- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- Amniote gastrulation in silico
- A dialog between cell adhesion and topology at the core of morphogenesis

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