Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
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- Receptor-structured modelling of EGFR-driven tumor initiation: from spatially resolved cell-based simulations to reduced population dynamics
- Intricate Dynamical Cross-Talk Between p53 Protein and Cell Cycle Regulators Governs Mammalian Cell Fate
- Reductive carboxylation via isocitrate dehydrogenase 1 supports cardiac metabolic adaptation during oncometabolic stress.
- Comparative Evaluation of DDA and DIA Based Proteomic Workflows in Beryllium Related Lung Disease
- Antifungal tolerance and resistance dynamics depend on infection load, drug treatment, and host innate immunity
- Purinergic signaling disrupts emergent patterns of multicellular coordination in basal Xenobots.
- PRIME: scalable, robust inference of mechanistic cell states from multimodal single-cell counts via probability generating functions
- Untargeted cord blood metabolomics reveals altered lipid metabolism in neonates with gastroschisis
- Organizing principles in the Nitrogen-Carbon Landscape of Marine Heterotrophic Bacteria
- Cellular Complexity and Systemic Immune Profiles across Ancestral Diversity in Thailand and Mainland Southeast Asia
- EpiLink: a simulation-based compatibility model for genomic transmission clustering in infectious disease surveillance
- Performance of family history-based colorectal cancer screening criteria by race and age at diagnosis in the Disparities and Cancer Epidemiology (DANCE) study
- Specific epigenetic age acceleration measures are associated with oral health outcomes in U.S. adults
- Guiding the development of climate counterfactuals for health impact attribution studies
- Early-life Urban Environment, Nutrition, and Pubertal Timing in Southern Europe: An Exposome Analysis
- Consistency of sleep timing and duration are associated with more physical activity and favorable heart rate metrics in a naturalistic cohort
- Excess mortality in Germany during 2020-2023: A descriptive age-stratified analysis
- Menopausal symptoms in peri- and postmenopausal women: systematic review and meta-analysis of prevalence, incidence, comorbidities, and clinical outcomes
- Identifying anaphylaxis using weakly-supervised prediction models and natural language processing
- Investigating shared genetic overlap of immune-mediated inflammatory diseases and cardiometabolic diseases
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- Spatial and temporal prediction of Aedes aegypti populations with atmospheric and urban forms dependence
- Mathematical modeling of JAK2V617F clonal expansion in a general population cohort
- Correction for Zhang et al., Deep learning framework for quantifying self-organization in Myxococcus xanthus
- Quantum algorithms for viscosity solutions to nonlinear Hamilton–Jacobi equations based on an entropy penalization method
- Mean field game model of the impact of reductions in support on faculty research activity
- Collective dynamics and synchronization of coupled hair-bundle models with elastic and viscous interactions
- Varying parameter ranges alters both partial rank correlation coefficient results and phenomenological behavior when modeling the epithelial mesenchymal transition
- Adaptive social distancing under variant-specific transmission dynamics in a spatial SEIIR model with reinforcement learning
- Long-range interaction of multi-spiral cAMP waves in Dictyostelium discoideum amoeba aggregation
- A physiologically based mathematical model describing estradiol and progesterone actions on glucose-insulin dynamics throughout the menstrual cycle
- Simultaneous parameter and function discovery in differential equations using physics-informed neural networks
- Global dynamics of an intraguild predation predator–prey model with density-dependent velocity suppression
- Impacts of cooperative hunting and Allee effect on the dynamics of a three-species system with sexually reproducing top predators
- Optimal experiment design for practical parameter identifiability and model discrimination
- Modeling the impact of adiponectin on tumor-immune dynamics: Stability, bifurcations, and optimal control
- scMagnifier: Resolving fine-grained cell subtypes via GRN-informed perturbations and consensus clustering
- Mechanisms underlying spontaneous and evoked calcium responses in oligodendrocyte precursor cells: A modeling investigation
- A comparison of contact patterns derived from the population structure in agent-based models and empirical contact survey data
- Ten simple rules for turning your qualifying exam into an NIH-style fellowship proposal: A guide for graduate students
- Combining machine learning and iterative experiments to keep pace with emerging viral variants of concern
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- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- A dialog between cell adhesion and topology at the core of morphogenesis
- Computational models of cellular bioenergetics indicate the role of Ca2+-regulated pyruvate dehydrogenase in metabolic remodeling
- Dynamics of cell fate patterning in discrete multicellular systems
- Primer: Drug discovery and patient-derived organoids
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