Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Encoding and Decoding Temporal Signals with Spiking Bandpass Wavelets
- Exact Enumeration of Phylogenetic Networks: The Tree-Child, Reticulation-Visible and Orchard Hierarchy
- Causal Organization Prior to and Promoting Self-Replication in a Catalytic Model of the Origin of Life
- Fold'EM: Direct atomic structure inference from Cryo-EM particles
- Stimulus symmetries can confound representational similarity analyses
- A likelihood-based framework for simultaneously learning both noise and growth dynamics using biologically-informed neural networks
- Multimodal reasoning for broadly neutralizing antibody discovery from label-free human B cell repertoires across virus families
- Clustering without clusters: the meta-criterion and centroid reliability mistake continuous dynamics for discrete states
- Toward Controlling Biology with Language:Offline Learning of Prompt-Conditioned Interventions for Cells, Organoids, and Biobots
- Generating eukaryotic reference genome assemblies: Earth BioGenome Project quality standards and recommendations
- A quantitative interactome map reveals affinity tailored hijacking of human cellular functions by resident and pathogenic bacteria
- Organizing principles of the cellular electron economy
- Assay coverage reshapes metabolic diagnosis and the interpretation of pathway disturbance
- Scalable and semi-automated Boolean network inference from multi-condition single-cell transcriptomes with scBOLT
- Mucosal architecture, microbiota resilience and metabolic disruption reveal holobiont dynamics during bovine respiratory disease
- ProteomeScout v4: An open-source, harmonized, ecosystem for post-translational modifications
- A global signature of microbiome resilience to climate stress
- Multi-omics profiling identifies a metabolic and energetic signature associated with neuronal dENL/AF9 suppression in aged flies
- A kinetic-aware approach to infer metabolic variations and flux using transcriptomics and metabolomics data
- Population reweighting and reporter distortion obscure ribosome regulation during translation inhibition
- Functional organization of multimorbidity links chronic disease incidence to shared genetic architecture
- Potential effect of replacing sedentary behavior with physical activity on the risk of atrial fibrillation: results from the UK Biobank and REGARDS study
- Identifying Register-Based Severity Trajectories in Anorexia Nervosa: Associations with Polygenic Scores, Psychiatric and Somatic Conditions
- Factors associated with the transition from health to disease for type 2 diabetes, cardiovascular disease and kidney dysfunction: A NAKO-IMMEDIATE analysis
- Role of heterogeneous infection histories on variant dynamics: exact and approximate approaches
- NMR metabolomics for cardiovascular-kidney-metabolic risk stratification in an integrated healthcare system
- Temporal Trends in Antimicrobial Resistance Among Clinically Important Pathogens in Iraq, 2021-2024: Implications for Empirical Antimicrobial Therapy
- Maternal Cigarette Smoking Trajectories and Risk of Low Birthweight in the United States: A Population-Based Analysis of 2023 to 2024 Natality Data
- Large-scale modelling of β-thalassaemia carrier prevalence: geostatistical predictions and population estimates from a global evidence base
- Growth trajectories and risk of underweight and overweight in childhood cancer patients and survivors: a longitudinal multicentre cohort study protocol
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- Mapping the combinatorial coding between olfactory receptors and perception with deep learning
- Multiobjective learning and design of bacteriophage specificity
- Synthetic tissue ecology: Ecological control of developmental self-organization across scales
- A diversified consortium of engineered biosensors enables multi-target quantification
- Interpretable biophysical neural networks of transcriptional activation domains separate roles of protein abundance and coactivator binding
- Generalized Taylor’s law for infinite-mean heavy-tailed data under dependence and heterogeneity
- Mathematical discovery and exploration can be done at scale
- Mantis: A foundation model for mechanistic disease forecasting
- Large-scale semidefinite programming with graphics processing units
- Network topology creates independent control of multiple checkpoints in the cell cycle system
- Echoes before collapse: Deep learning detection of flickering in complex systems
- Utility-driven cooperation and emergent group diversity in the N-player Stag Hunt game: A framework relevant to collective biological behavior
- From neural propagation to conscious experience: A geometro-diffusion theory of consciousness
- Stochastic dynamics of an epidemic-behavior model
- Pillars of theoretical biology: Superspreading and the effect of individual variation on disease emergence
- Revisiting Fulvestrant Dosing: Biomarker-Driven Mathematical PK/PD Modeling and Dosing Optimization in Estrogen Receptor–Positive Breast Cancer
- Trade-off between Allee remediation and disease transmission for adaptive survival: A mathematical model on Allee-exposed species
- Scalable branch-and-bound model selection with non-monotonic criteria including AIC, BIC and Mallows’s Cp
- Optimal control of dengue under vaccine heterogeneity: From dynamical analysis to dynamic strategy optimization
- Transition-pair structure and near-extremal third-position transition robustness in the standard genetic code
- Robust prediction of drug combination side effects in realistic settings
- DeCTCF: Decoding CTCF binding sequences by leveraging predicted epigenomic features
- Machine learning and Voronoi-based decision boundaries for Bacterial vaginosis to determine population- specific microbial interactions
- A graph-attentive GAN for rare-cell-aware single-cell RNA-seq data generation
- Spatially resolved reaction–diffusion modeling reveals effects of intracellular spatial heterogeneity on yeast galactose network dynamics
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- Next-generation metabolic models: From multi-constraint integration to AI-driven whole-cell kinetic simulation
- Unleashing the potential of whole-cell modelling one step at a time
- The evolution of standards in systems biology: From metabolic and multi-scale to whole-cell models
- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
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