Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- If Grid Cells are the Answer, What is the Question? A Review of Normative Grid Cell Theory
- Learning Contact Policies for SEIR Epidemics on Networks: A Mean-Field Game Approach
- CytoNet: A Foundation Model for the Human Cerebral Cortex at Cellular Resolution
- Convex Efficient Coding
- A Dynamical Theory of Sequential Retrieval in Input-Driven Hopfield Networks
- AbAffinity: A Large Language Model for Predicting Antibody Binding Affinity against SARS-CoV-2
- Relay transitions and invasion thresholds in multi-strain rumor models: a chemical reaction network approach
- RNA Dynamics and Interactions Revealed through Atomistic Simulations
- SeekRBP: Leveraging Sequence-Structure Integration with Reinforcement Learning for Receptor-Binding Protein Identification
- The Spatial and Temporal Resolution of Motor Intention in Multi-Target Prediction
- A systemic circadian nicotinic acid riboside (NaR) signal engages the unfolded protein response and adipogenesis via the prefoldin complex
- Molecular Transducers of Physical Activity Consortium (MoTrPAC): Initial Insights into the Dynamic Human Responses to Exercise
- MORPHE: Bridging Image Generation and Spatial Omics for Tissue Synthesis
- An analytical framework for phenotypic selection of fitness-conferring genes
- Two Stages of Dynamic Metabolic and Transcriptomic Remodeling During the Adaptation to Caloric Restriction in Male C57BL/6J
- Ageing impacts extracellular matrix turnover and remodelling in the kidney
- Blood Biochemical Responses to Acute Exercise: Findings from the Molecular Transducers of Physical Activity Consortium (MoTrPAC)
- Exercise modulation of the alternative splicing landscape in human tissues
- Comparison of different computational frameworks for metabolic modeling from single-cell transcriptomics data in glioblastoma
- Multi-Omic, Multi-Tissue Responses to Acute Exercise in Sedentary Adults: Findings from the Molecular Transducers of Physical Activity Consortium
- The Impact of Neglecting Vaccine Unwillingness in Epidemiology Models
- Risk mapping novel respiratory pathogens with large-scale dynamic contact networks
- Price Per Standard Drink and Alcohol-Related Outcomes Among Vulnerable Groups in British Columbia: Findings from the Costs, Harms, Expenditures and Alcohol Prices Study
- An E-value-Informed Sensitivity Analysis Framework for Hybrid Controlled Trials
- A bootstrap particle filter for viral Rt inference and forecasting using wastewater data
- Less is more: modelling the impact of species-targeted versus broadcast larviciding approaches for malaria control in rural settings
- Effectiveness of new treatment modalities for localized prostate cancer through patient-reported outcome measures: 5 years comparative study.
- Stroke burden in the Philippines (1990-2023): Temporal trends and risk factors from the GBD study
- Chronic absenteeism in Canadian kindergarten classes, pre- and post-COVID-19, and its association with concurrent developmental vulnerability
- High burden of maternal and congenital syphilis in Lima, Peru: an epidemiological analysis from 2023-2025
- Reinforcement learning-based design of sequential drug treatment targeting the evolving tumour landscape with SequenTx
- Cut instance mixing: A domain-specific data augmentation method applied to gastrointestinal lesion detection
- Multi task learning based early prediction model for antibiotic resistance using multi institutional cohort data
- A unified framework for multiomics deconvolution
- Unifying non-Markovian dynamics and agent heterogeneity in scalable stochastic networks
- Artificial intelligence for microbiology and microbiome research
- We wait for disease to shout—What if we listened when biology whispered?
- What problem do you hope bioengineering or synthetic biology approaches will enable us to tackle in the next decade?
- The hierarchical timescale hypothesis: Functional and structural convergence of biological networks and artificial neural nets
- Generative AI for synthetic biology: Designing biological parts, circuits, and genomes
- Mechanical compliance enhances the impulsive energy absorption of glassy polymer films
- Operator-level quantum acceleration of non-logconcave sampling
- Strategy evolution on temporal hypergraphs
- Scaling laws for function diversity and specialization across socioeconomic and biological complex systems
- Leveraging probabilistic forecasts for dengue preparedness and control: The 2024 Dengue Forecasting Sprint in Brazil
- Optimising chemotherapy for advanced high-grade serous ovarian cancer via delay-differential equations
- Age and generation-based model of metastatic cancer: From micrometastases to macrometastases
- The evolutionary success of angiosperms: a foundation of bioenergetic surplus
- Modeling how hunting strategies and pack size shape each other
- Local control of cellular proliferation underlies neuromast regeneration in zebrafish
- A model for a population of trees structured by phenological traits
- Tumor growth and immune response: On the impact of the space-structuration of the tumor microenvironment
- A partition method for bounding continuous-time Markov chain models of general reaction network
- Modeling periodic transcriptions in tandem gene systems
- Why does nature force the creation of proteobacteria community in the estuarine ecosystem? - A theoretical model
- ConNIS and labeling instability: New statistical methods for improving the detection of essential genes in TraDIS libraries
- Reconstructing the incidence rate and immune fraction of the population via a single snapshot survey: A case study of COVID-19 in Japan
- Morphological determinants of glycosylation efficiency in Golgi cisternae
- Contrastive learning for passive acoustic monitoring: A framework for sound source discovery and cross-site comparison in marine soundscapes
- An integrative analysis reveals the mechanism of plastic stabilizers inducing breast cancer
- In Silico Comparison of Rifampicin and 25-desacetyl Rifampicin-Induced PXR-Mediated CYP450 Transcriptional Response in 3D Primary Human Hepatocytes
- Topological Data Analysis for Unsupervised Feature Selection in Large Scale Spatial Omics Data Sets
- Platelet Adhesion and Aggregation Dynamics over Collagen- and VWF-coated Surfaces: Insights from Dissipative Particle Dynamics Simulations and Microfluidic Experiments
- SSRCA: A Novel Machine Learning Pipeline to Perform Sensitivity Analysis for Agent-Based Models
- Evolutionary Dynamics at the Leading Edge of Biological Invasions
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- Cell sorting models in tissue development
- Editorial overview: Mathematical modeling of disease processes
- Think before you fit: Parameter identifiability, sensitivity and uncertainty in systems biology models
- Machine-learned summary statistics for Bayesian inference of systems biology–model parameters: Opportunities and challenges
- Structural identifiability of compartmental models: Recent progress and future directions
- Arboreal networks and their underlying trees
- Spatial modeling of forest-savanna bistability: impacts of fire dynamics and timescale separation
- Population size in stochastic multi-patch ecological models
- Spatiotemporal cholera dynamics with antibiotic resistance and vaccination via demographic-epidemic data in Zimbabwe
- Specieslike clusters based on identical ancestor points