Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
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- Differential routing of spectral light inputs separates circadian timing from energetic responsiveness
- Metabolomic, lipidomic, and N-glycomic analyses of a human cell model of Krabbe disease reveal treatable deficits in glycosylation and serine-ceramide metabolism
- Structural proteomics reveals a coagulation-complement accessibility signature of macrovascular invasion in hepatocellular carcinoma
- LIPOGRID: A HIGH-THROUGHPUT MULTI-OMICS PERTURBATION SCREEN DISSECTS THE GENETIC ARCHITECTURE OF LIPID METABOLISM
- Decoding the role of microbial interspecies interactions on nitrogen fixation
- A dysregulated stromal remodelling programme characterises prior anti-TNF failure in ulcerative colitis
- Glucose repression of HXK1 is glucose flux-dependent via non-canonical regulation of Mig1
- Solving High-Dimensional Population Balance Equations via Dynamics-Preserving Autoencoders
- Cytokine interaction networks, not individual cytokines, drive anti-TNF response in Crohn's disease
- Improved Metabolic Flux Estimations through Compositional Data Analysis
- Beyond Signal Detection: Sequential Target Trial Emulations to Confirm Previously Detected Adverse Drug Event Signals for Atorvastatin in Older Medicare Beneficiaries
- Individual and Community-Level Determinants of Hypertension among Overweight and Obese Adults in Ethiopia: A Multilevel Analysis of Demographic and Health Survey Data
- Competing event regression on the relative subdistribution and cumulative-incidence scales
- Prevalence of Non-alcoholic fatty liver disease (NAFLD) among Children and Adolescents (<18 years) in India: A Systematic Review and Meta-Analysis
- A Simulation Study Comparing Multiple Imputation and Complete Case Analysis for Handling Missing Preschool Body Mass Index
- Age norms for DunedinPACE: An epigenetic pace of aging biomarker
- Population-scale analysis reveals limited and non-generalizable associations between the gut microbiome and obesity in Asian adults
- From surveillance maturity to analytical readiness: an estimand-first framework for real-time outbreak analysis under imperfect data
- Efficacy-adjusted use: modelling a refined metric of insecticide treated net coverage across Africa
- Association of age at menopause and risk of depression during the perimenopause and postmenopause
- Aligning protein-generative models to experimental fitness with ProteinDPO
- From pixels to patterns: the AI revolution in stem cell-derived models
- How to build an AI-driven digital organism
- A foundation model for acute abdomen diagnosis stratification and triage on noncontrast computed tomography
- Towards efficient perturbation for the noncoding genome
- RIG-Ing the system to balance immune activation and inflammatory tissue damage in the airways
- Programmable regenerative tissues: Converging mammalian synthetic biology and tissue engineering
- The molecular landscape of cellular metal ion biology
- BulkFormer: A large-scale foundation model for bulk transcriptomes
- Quantitative cytokine profiling of primary human macrophages reveals distinct single-cell modes of trained immunity
- Many-eyes and sentinels in selfish and cooperative groups
- Hyperedge approximation for stochastic processes on higher-order networks
- Attention to heterogeneous information sources affects epidemic outcomes
- Reply to Szöllősi and Williams: The observation threshold mitigates the bias of transient genes on ancestral reconstruction
- Ancestral gene content estimates under gain–loss–duplication depend on the chosen observation threshold
- Infection-age structured transmission model highlights the efficacy of case-finding operations
- Energetic thresholds and hygienic cannibalism govern claustral ant colony founding under fungal challenge
- A comparison of alternative vaccination strategies for protecting those vulnerable to illness, hospitalization, or death upon infection with SARS-CoV-2
- Evolution of quantitative traits: Exploring the ecological, social and genetic bases of adaptive polymorphism
- Directed cell migration from protrusion-adhesion coupling under local chemotactic regulation
- Seasonal impacts on brucellosis transmission mediated by live sheep supply-demand dynamics
- Coupled information-epidemic dynamics with emotional thresholds and behavioral regression on multiplex networks
- Bistability analysis of a hybrid notch-delta signaling model in a single cell interacting with fixed external proteins
- Exploration of hepatitis B virus infection dynamics through physics-informed deep learning approach
- A practical introduction to ODE modelling in Stan for biological systems
- Design of an immunogen containing multidimensionally conserved and immunogenic parts of the HIV proteome
- scKanFormer: A Transformer-KAN framework with biologically informed attention for cell type annotation in large-scale scRNA-seq data
- CLASPP: A unified model for predicting post-translational modifications
- Structure-aware deep learning enhances m6A prediction and reveals cell type-associated RNA structural signatures
- Improving the reliability of polygenic risk score-based prediction for cardiovascular and renal complications across ancestries in type 2 diabetes using Mondrian Cross-Conformal Prediction
- An Alternative Approach to Compute the Likelihood for the DAISIE (Dynamic Assembly of Island Biota Through Speciation, Immigration, and Extinction) Model
- A Dynamic Mechanism for Prevalence of Triangles in Competitive Networks
- Stochastic Chiral Pharmacokinetics: Dynamics with Dual Randomized Dosing Regimens
- Correcting Structural Bias in Dynamical Models of Infectious Disease Using a Bayesian State-Space Framework
- Approaches for Assessing Parameter Identifiability in Mathematical Biology
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- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- Amniote gastrulation in silico
- A dialog between cell adhesion and topology at the core of morphogenesis
- Computational models of cellular bioenergetics indicate the role of Ca2+-regulated pyruvate dehydrogenase in metabolic remodeling
- The effect of treatment-induced resistance in a two-strain tuberculosis model with age structure and spatial diffusion
- Unattainable regions in the space of genetic relationships
- When reoxygenation fails: a dynamical model of HIF-1$$\alpha $$-mediated metabolic breakdown under hypoxia and SARS-CoV-2 infection
- Complex bifurcation dynamics of tumor–immune interactions incorporating combination therapies
- Site Frequency Spectrum in stationary branching populations