Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.

- The Hill numbers synthesize and generalize measures of trait polygenicity
- Data-driven geometric phase in biological locomotion
- Reliability assessment and multicenter clinical application of magnetic resonance methods for knee cartilage quantification
- Beta frequency shifts in decision making: Spectral fingerprints or communication channels?
- Leveraging secondary-structure information for accurate nucleic acid structure prediction with OFoldNA
- Three-dimensional imaging of isolated membrane-protein complexes in vacuo with an X-ray laser
- Attention when you need
- Elucidating the Space of Enzymatic Reaction: A Unified Benchmark and Pretrained Model
- Neural Decoding as Cognitive Inference
- If the brain were so simple: Information-based drivers of intelligence and their interaction through an n-body-inspired framework

- Higher-Order Organization Links Circulating Metabolites to Glucocorticoid Action in Human Adipose Tissue
- A Multilayer Human Skin Diseasome Links Molecular Architecture, Clinical Co-occurrence, and Drug-Reversal Signatures
- Archetype analysis of multiplexed antibody imaging reveals interpretable morphological programs in optical pooled screens
- Multi-domain analysis of the fecal microbiome of dairy heifers, beef heifers, bred beef heifers, and adult beef cows in the central United States using paired 16S rRNA and 18S rRNA metabarcoding
- Pharmacological Effects and Candidate Bioactive Constituents of Huanglian Wendan Decoction in Experimental Metabolic Syndrome: Multi-Omics Analysis of Gut-Liver Metabolism and NLRP3 Signaling
- Measurement-Induced Decision Loss: A feasible-set theory of microbiome intervention under observation loss
- Unified Network Spectroscopy: Inferring Reduced Biological Dynamics from Fluctuations under Structured Noise and Broken Ergodicity
- Proteomes reflect size-based growth constraints across diverse microbes
- Modeling aroma release during in vivo food oral processing using digimouth
- Impact of oxygen fluctuation and consumption on the dynamics of a reduced go-or-grow model for tumor cell invasion

- Life-course patterns of heavy menstrual bleeding and menstrual pain across multiple population-based cohorts
- Seasonally Normalized Vitamin D Status and Long-Term Mortality and Multisystem Disease Risk in the UK Biobank
- Burden of Non-Communicable Diseases Attributable to Polygenic Risk and Its Association with Healthcare Utilization in Taiwan
- Associations between commonly consumed beverages and the oral microbiome in three US cohort studies
- The transition to retirement and dementia risk: An application of sequence analysis
- Cardiovascular and cancer mortality inversely associated with long-term ambient ultraviolet exposure across US Health Service Areas with UK Biobank corroboration
- Surveillance of bacterial and fungal infections in hospitalised COVID-19 patients: an ISARIC/WHO CCP-UK and UKHSA linkage study
- The Gut Microbiome-Amino Acid Pathway to Emotional Lability: A Multi-Step Mendelian Randomization Study
- Inflammation-Related Biomarkers Linking Environmental Chemical Mixtures and Metabolic Dysfunction-Associated Steatotic Liver Disease: A Population-Based Study from NHANES 1999-2020
- Mortality Baselines and Excess Mortality Events in Belgian and Greek Cities Using Singular Spectrum Analysis

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- Mapping the combinatorial coding between olfactory receptors and perception with deep learning
- Multiobjective learning and design of bacteriophage specificity
- Synthetic tissue ecology: Ecological control of developmental self-organization across scales
- A diversified consortium of engineered biosensors enables multi-target quantification
- Interpretable biophysical neural networks of transcriptional activation domains separate roles of protein abundance and coactivator binding

- Generalized Taylor’s law for infinite-mean heavy-tailed data under dependence and heterogeneity
- Mathematical discovery and exploration can be done at scale
- Mantis: A foundation model for mechanistic disease forecasting
- Large-scale semidefinite programming with graphics processing units
- Network topology creates independent control of multiple checkpoints in the cell cycle system

- Echoes before collapse: Deep learning detection of flickering in complex systems
- Utility-driven cooperation and emergent group diversity in the N-player Stag Hunt game: A framework relevant to collective biological behavior
- From neural propagation to conscious experience: A geometro-diffusion theory of consciousness
- Stochastic dynamics of an epidemic-behavior model
- Pillars of theoretical biology: Superspreading and the effect of individual variation on disease emergence

- Harvesting-driven dynamics in a modified Holling-Tanner model
- Regulating brucellosis network dynamics via clustering: Multistability, protective intervals and transient oscillations
- Examining the impact of forcing function inputs on structural identifiability
- Optimising malaria and dengue case management through optimal diagnostic test allocation under budget constraints
- Revisiting Fulvestrant Dosing: Biomarker-Driven Mathematical PK/PD Modeling and Dosing Optimization in Estrogen Receptor–Positive Breast Cancer

- Dynamic workforce modulation and foraging efficiency in Eusocial insect colonies
- How does explicit reliability guide choices? Effect of trustworthiness on choice and metacognition
- Process bigraphs and the architecture of compositional systems biology
- A statistical damage model for coupled mechano-electrophysiological axonal injury
- Hyper-mutational processes provide a head-start for weak cancer drivers: Explaining atypical KRAS variants

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- Next-generation metabolic models: From multi-constraint integration to AI-driven whole-cell kinetic simulation
- Unleashing the potential of whole-cell modelling one step at a time
- The evolution of standards in systems biology: From metabolic and multi-scale to whole-cell models
- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling

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