Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
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- Multi-omic characterization of axolotl perilymph-cerebrospinal fluid reveals shifts in composition during limb regeneration
- Defining glycoproteoform landscapes through an integrated glycoproteomics approach enabled by high-resolving power proton transfer charge reduction tandem mass spectrometry
- Confluent growth state dependent transcriptomic adaptation in A549 lung cancer cells
- A mathematical investigation of the interplay between vasculature and intratumoral cellular heterogeneity during tumor progression
- Regulatory stochasticity drives opposing phenotypic outcomes in cell-fate decision networks
- In the same cell, the proteome defines cellular state and the transcriptome marks transitions
- A Bayesian Multi-Species Approach Infers Gene Regulatory Networks Across Non-Model Organisms
- Inference of self-limiting neutrophil swarming dynamics using Bayesian physics-informed neural networks
- Likelihood-Based Inference and Model Selection for Stochastic Gene Expression in Probability-Generating-Function Space
- Genome mutations and environmental perturbations reshape the epigenomic topology to drive functional collapse in digital cells
- Iron homeostasis and endometriosis risk: Genetic evidence for a shared biological link
- Loss to Follow-Up Among Patients with Kaposi Sarcoma at the Ocean Road Cancer Institute, Tanzania: A Fine-Gray Competing-Risks Analysis of Death as a Competing Event
- Factors associated with vaccination against Seasonal Influenza and SARS-CoV-2 in the UK among FluSurvey participants, 2023-2025.
- DNA methylation signal of birthweight generalizes to high-risk pregnancies and is independent of genetic, maternal, and obstetric factors: a twin study
- Associations between adult obesity and mid-life weight change patterns with cardiometabolic health in early old age: Evidence from the 1958 British birth cohort
- Mathematical Modeling of Japanese Encephalitis: Multi-Host Transmission Dynamics and Intervention Strategies
- Quantifying the impact of bacterial vaccines against antibiotic resistance: accounting for transmission and selection dynamics
- Modeling The Role of Variant Evolution and Population Immunity in Epidemiological Patterns of Pandemic Respiratory Viruses
- Determinants of Access to Autism Spectrum Disorder Diagnostic Services: A Systematic Review and Meta-analysis of Factors Associated with Diagnostic Completion, Diagnostic Pathways, and Timely Diagnosis
- Wastewater and Environmental Surveillance in Cities with Sewered and Non-sewered Sanitation: Evidence from Kampala, Uganda
- Why variant effect predictors and multiplexed assays agree and disagree
- Mucosal IgA to pre-fusion F protein predicts protection from RSV infection in a high burden setting
- Longitudinal alignments and syntheses of multimodal clinical data for personalized medicine with the PULSE framework
- Generalizable multiple-instance learning for computational pathology
- A patient’s longitudinal history reconstructs their unmeasured molecular profile
- Mechanical feedback drives fractal airway organization
- Beyond differential expression: Differential variability as an underappreciated axis in transcriptomics
- The emergence of the fractal bronchial tree
- High-throughput DNA engineering by mating bacteria
- A data-driven modeling framework for mapping genotypes to synthetic microbial community functions
- Uncovering dynamic human brain phase coherence networks
- Stochasticity and probabilistic trajectory scoring are essential for data-driven closures of chaotic systems
- Group size effects and collective misalignment in LLM multi-agent systems
- Many-eyes and sentinels in selfish and cooperative groups
- One rule does not fit all: Deviations from universality in human mobility modeling
- A revised ribosome–antibiotic model with proportional feedback synthesis explains recovery from translation inhibition
- Pandemic waves as the outcome of coupled social and disease dynamics: A mathematical modelling study
- A systems-based analysis of feedback structure and characteristic timescales in turnover-mediated mechanical adaptation
- From signal dynamics to cell fate: The role of learning duration
- Origin of fast backward steps and detachment of kinesin motor under backward load
- Perspective: Allee effects in theory and reality
- Hybrid mechanistic-machine learning models in biosciences: Causality, forecasting, and lab-to-field translation
- Permanent charge effects on current-voltage relations via classical Poisson-Nernst-Planck systems under relaxed electroneutrality boundary conditions
- Beyond : How vaccination and post-infection mortality drive epidemic persistence and oscillations
- Mathematical modeling of the effects of potassium ions on the tumor immune system and virotherapy
- GPCR-GO: Relation-aware graph learning for predicting Gene Ontology terms of G protein-coupled receptors
- Metal binding site alignment enables network-driven discovery of recurrent geometries across sequence-divergent proteins and drug off-targets
- Simple birth-death-mutation models predict some—but not all—aspects of the experimental evolution of antibiotic resistance
- Disentangling the drivers of heterogeneity in SARS-CoV-2 transmission from data on viral load and daily contact rates
- ASPIRE: Accurate alternative splicing prediction from limited RNA sequencing data and a minimal gene set
- Eco-Evolutionary Dynamics of Proliferation Heterogeneity: A Phenotype-Structured Model for Tumor Growth and Treatment Response
- Stochastic Analysis of a Plant-Vector-Virus Model with Saturated Incidence Rate
- Gene Genealogies in Haploid Populations Evolving According to Sweepstakes Reproduction
- Delay Differential Equation Approach to Oligomerization Reveals the Delay Dynamics Underlying Oscillations in Mitochondrial Fission
- The Bulletin of Mathematical Biology and the Society for Mathematical Biology: Strengthening our Shared Community
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- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- Amniote gastrulation in silico
- A dialog between cell adhesion and topology at the core of morphogenesis
- Computational models of cellular bioenergetics indicate the role of Ca2+-regulated pyruvate dehydrogenase in metabolic remodeling
- Large deviations of piecewise-deterministic Markov processes with application to stochastic calcium waves
- Evolution of cooperation on graphs with degree-dependent inertia
- Correction to: Transient tumor-induced disruption of peristaltic flow: a magnetohydrodynamic modeling framework
- Disease extinction in finite time for a continuous-time SIRS model
- On the stability of discrete reaction-diffusion systems of networked dynamical systems