Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- ToolMol: Evolutionary Agentic Framework for Multi-objective Drug Discovery
- Directional Confusions Reveal Divergent Inductive Biases Through Rate-Distortion Geometry in Human and Machine Vision
- Interpretable EEG Microstate Discovery via Variational Deep Embedding: A Systematic Architecture Search with Multi-Quadrant Evaluation
- PesTwin: a biology-informed Digital Twin for enabling precision farming
- Emergent population dynamics of random walkers with cooperative reproduction and spatial selection
- REALM: Retrospective Encoder Alignment for LFP Modeling
- The generic geometry of steady state varieties
- Feature Visualization Recovers Known Cortical Selectivity from TRIBE v2
- Kin-ematic Exclusion in Active Matter: Modelling Mutual Inhibition in \textit{Pseudomonas aeruginosa} Sibling Colonies
- Frequency-Space Mechanics: A Sequence and Coordinate-Free Representation for Protein Function Prediction
- Coarse-graining metabolic networks via feature learning reveals cross-species growth laws
- Co-expression network analysis reveals repression of Igf2bp2 by REV-ERBβ in skeletal muscle
- Simultaneous single-cell profiling of the transcriptome and proteome
- Genome-scale community metabolic modeling of maize root-associated microbiota shows that root exudates stimulate diverse metabolic interactions
- Global quantification of mammalian gene expression noise
- Protein Stability, Turnover Kinetics, and Abundance Constrain the Scaling of Protein Interaction Networks
- Gene regulatory networks define human airway epithelial cell types and their distinct responses to type I interferon
- Efficient Bayesian inference for ordinary differential equation models from experimental data with uncertain measurement times
- Computer experimentation on E. coli ammonium transport and assimilation reveals mechanisms for energy coupling, balanced futile cycling, and robust growth
- Riemannian Tensor Analysis Identifies a Bifurcation State in the Single-Cell Transcriptomic Landscape of Parkinson's Disease
- Self-Rated Health Inequalities Among Registered Nurses: A Cross-Sectional Analysis of UK Longitudinal Studies
- Quantifying and identifying strategies to improve rotavirus vaccine impact in low- and middle-income countries
- Benchmarking foundation models for improving confounding control in target trial emulation
- Association between remnant cholesterol-to-HDL-C ratio and obstructive sleep apnea risk in U.S. adults: a cross-sectional analysis of NHANES 2015-2018
- From naive to foundation: benchmarking models for epidemic forecasting
- The covariance matrix of metapopulation disease models and applications to early warning signals
- Source Matters: An Examination of Drug Checking Samples from Police Departments and Community Based Programs in Massachusetts
- Canine Rabies in NDjamena: A Metapopulation SEIR Model Incorporating Vaccination and Inter-Patch Distances
- Modeling the Impact of Exposed Cases in a Hantavirus Outbreak on a Cruise Ship
- Declining but increasingly concentrated HIV stigma in rural Uganda: population-based cohort study, 2014-2024
- Dissecting epigenetic heterogeneity in single-cell DNA methylomes with a unified framework
- Robust integration of single-cell datasets with imbalanced modality composition
- Large-scale data-driven pre-trained DNA models enhance performance across diverse genomics tasks
- Sleep chart of biological ageing clocks in middle and late life
- Deciphering microenvironmental heterogeneity by scalable Niche Guided Module Discovery
- Engineering sensor-based antithetic integral controllers for enhanced dynamic performance and noise attenuation
- The impact of package selection and versioning on single-cell RNA-seq analysis
- NOT-gated chimeric antigen receptor circuits in T and NK cells
- Constructing a holistic map of cell fate decision by hyper solution landscape
- Systemic rhythmicity of host and bacterial bile acid amidates in the mouse
- Data-driven particle dynamics: Structure-preserving coarse-graining for emergent behavior in nonequilibrium systems
- Reconstructing ancient genomes from gene counts: A robust likelihood framework with sampling bias correction
- Stable flapping flight in morphological space: Model, simulation, and explicit stability criteria
- Novel Knotted Solenoid fold with order-shifted coil arrangement leads to nontrivial 31 topology
- A parallel algorithm for the computation of the Jones polynomial
- Mathematical model of tumor-macrophage interactions: Elucidating the tumor-driven macrophage phenotype reprogramming
- Optimisation of pembrolizumab therapy for de novo metastatic MSI-H/dMMR colorectal cancer using data-driven delay integro-differential equations
- Modelling the role of phages in biofilm ecosystems and the spread of antimicrobial resistance
- In silico investigation of the role of local and global inflammation-driven feedback in myelopoiesis and clonal cell expansion
- The ideal free distribution in temporally varying environments
- An epidemiological model with arbitrary distributions for infection and relapse stages
- Spatial pattern regulation in pine wilt disease models with feedback mechanisms
- A potential surrogate model for efficient inference of stochastic GLUT4 translocation
- When simple is enough: Binary models capture social complexity in coupled human-environment systems
- Parameterisation of epidemiological models from small field experiments: A case study of banana bunchy top virus transmission
- Exploring the relationship between vascular remodelling and tumour growth using agent-based modelling
- Decoupling between activation time and steady-state level in input-output responses
- VesiclePy: A machine learning vesicle analysis toolbox for volume electron microscopy
- Art’s hidden topology: A window into human perception
- Multiplex networks-based directed graph neural network for cancer driver gene identification
- A Hallmark-Integrated, Agent-Based Framework for Intratumor Heterogeneity in Melanoma Evolution
- Generalizing Matrix Representations to Fully Heterochronous Ranked Tree Shapes
- From Trait-Structured Within-Host Dynamics to SIR Models: A Multiscale Framework With Re-Exposure
- Observer-Based Source Localization in Tree Infection Networks via Laplace Transforms
- Analysis of the Modulation of RAF Signaling by 14-3-3 Proteins
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- Primer: Drug discovery and patient-derived organoids
- Disruption of calcium homeostasis by β-amyloids: Insights from dynamical models
- Bifurcation theory and gene regulatory networks: A framework for understanding cell fate decisions in retinal regeneration
- Complex versus complicated systems biology, universality versus detailed modeling
- Simple systems, complex dynamics: Lessons from minimal gene regulatory networks
- Numerical Analysis of BIMs for Stochastic SIR and SIS Models with Variable Contact Diffusion Rates
- Exploring the effective strategies for allocating limited resources to minimize cholera outbreaks
- Mathematical modelling of methane-induced transitions in aquatic ecosystems
- Numerical analysis & modelling in the life sciences: a topical collection in honor of Ezio Venturino
- Propagation dynamics of reaction-diffusion systems in sugar beet agro-ecosystems