Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
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- SpaReg: sparsity-based 3D reconstruction of tissue microenvironments at native resolution across morphological and spatial molecular modalities
- Comprehensive in silico analysis reveals candidate regulatory mechanisms underlying selective cerebellar vulnerability in pontocerebellar hypoplasia
- Interpretable machine learning coupled to gene regulatory networks uncovers subcircuits underlying cell fate decisions
- Integrative proteomic analysis and molecular dynamics simulations of ANKLE2 reveal mechanisms of microcephaly
- TxCyto: A machine learning framework for estimating cytokine activity from whole transcriptome
- Proteomic comparison of Marburg and Kasokero virus infection in natural host Egyptian rousette bat reveals distinct antiviral pathways
- Limit-pushing overexpression reveals constraints on protein abundance
- Accessing Enzyme Kinetic Data and Prediction Methods at Scale
- A thermoregulatory design principle for transitions into hypometabolism
- Quantitative machine learning of protein interactions reveals the multiscale organization and molecular syntax of signaling networks
- Wastewater metagenomic sequencing enables broad pathogen and resistome monitoring in Lagos, Nigeria
- Social Isolation and All-Cause and Cause-Specific Mortality in the UK Biobank: The Modifying Role of Non-Commute Transportation Mode
- Distinct Somatic Mutational Landscapes in Paired Blood and Arterial Tissues in Coronary Artery Disease
- Within-Year PM2.5 Exposure Structure Provides Mortality-Predictive Information Beyond the Annual Mean
- Impact of climate and acquired immunity on malaria burden in Senegal and The Gambia: an agent-based modeling study
- Finding Safety Signals in Sparse Data: Zero-Inflated Models for Pharmacovigilance studies
- Associations Between Measures of Sleep Health and Cognitive Function in Older Adults
- Repeated SARS-CoV-2 Introductions with Limited Local Establishment in Bangladesh, 2020-2025
- Distinct Type 2 Diabetes Components Exert Contrasting Effects on Abdominal Aortic Aneurysm Development
- Protective effect of influenza vaccine in Brazilian patients hospitalised for severe acute respiratory infection, 2023-2025
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- Mapping the combinatorial coding between olfactory receptors and perception with deep learning
- Multiobjective learning and design of bacteriophage specificity
- Synthetic tissue ecology: Ecological control of developmental self-organization across scales
- A diversified consortium of engineered biosensors enables multi-target quantification
- Interpretable biophysical neural networks of transcriptional activation domains separate roles of protein abundance and coactivator binding
- Large-scale semidefinite programming with graphics processing units
- Mantis: A foundation model for mechanistic disease forecasting
- Network topology creates independent control of multiple checkpoints in the cell cycle system
- Messaging strategies and the emergence of echo chambers in collective decision-making
- Correction for Zhang et al., Reconstructing the early spatial spread of pandemic respiratory viruses in the United States
- Stochastic dynamics of an epidemic-behavior model
- Pillars of theoretical biology: Superspreading and the effect of individual variation on disease emergence
- Brain cancer in silico modelling - the roadmap ahead
- Self-organized pattern formation of a common tropical alga
- Spatiotemporal patterns in predator-prey system with free space and limited resources
- Trade-off between Allee remediation and disease transmission for adaptive survival: A mathematical model on Allee-exposed species
- Scalable branch-and-bound model selection with non-monotonic criteria including AIC, BIC and Mallows’s Cp
- Optimal control of dengue under vaccine heterogeneity: From dynamical analysis to dynamic strategy optimization
- Transition-pair structure and near-extremal third-position transition robustness in the standard genetic code
- Data requirements for accurate extinction-risk prediction in bistable populations
- Spatiotemporal modeling of GPCR signaling: The role of endosomal dynamics and receptor recycling
- A compartmentalized SCN model explains temperature resistance through interregional phase differences
- Using iPALM to determine protein organisation in cardiac muscle Z-discs
- From observable fermentation data to hidden cell states: A modeling study of a mixotrophic Clostridium coculture under perfusion mode
- Attribution assignment for deep-generative sequence models enables interpretability analysis using positive-only data
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- Next-generation metabolic models: From multi-constraint integration to AI-driven whole-cell kinetic simulation
- Unleashing the potential of whole-cell modelling one step at a time
- The evolution of standards in systems biology: From metabolic and multi-scale to whole-cell models
- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
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