Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Neurological Consequences of COVID-19 Infection. (arXiv:2106.05388v1 [q-bio.NC])
- Fine-Grained System Identification of Nonlinear Neural Circuits. (arXiv:2106.05400v1 [q-bio.QM])
- In silico Prediction of Mozenavir as potential drug for SARS-CoV-2 infection via Binding Multiple Drug Targets. (arXiv:2106.05440v1 [q-bio.BM])
- Adaptive machine learning for protein engineering. (arXiv:2106.05466v1 [q-bio.QM])
- Nerve Impulses Have Three Interdependent Functions: Communication, Modulation And Computation. (arXiv:2106.05538v1 [q-bio.NC])
- Dynamical Mechanism of Sampling-based Stochastic Inference under Probabilistic Population Codes. (arXiv:2106.05591v1 [q-bio.NC])
- Feedforward and feedback influences through distinct frequency bands between two spiking-neuron networks. (arXiv:2106.05783v1 [q-bio.NC])
- Cascade and Parallel Convolutional Recurrent Neural Networks on EEG-based Intention Recognition for Brain Computer Interface. (arXiv:1708.06578v2 [cs.HC] UPDATED)
- ATOM3D: Tasks On Molecules in Three Dimensions. (arXiv:2012.04035v2 [cs.LG] UPDATED)
- Understanding Memory B Cell Selection. (arXiv:2012.05817v2 [q-bio.CB] UPDATED)
- Unraveling the functions of uncharacterized transcription factors in Escherichia coli using ChIP-exo
- Whole-cell modeling in yeast predicts compartment-specific proteome constraints that drive metabolic strategies
- The acquisition of additional feedback loops may optimize and speed up the response of quorum sensing
- Systems analysis reveals ageing-related perturbations in retinoids and sex hormones in Alzheimer's and Parkinson's diseases
- Monod model is insufficient to explain biomass growth in nitrogen-limited yeast fermentation
- Characterizing non-exponential growth and bimodal cell size distributions in Schizosaccharomyces pombe: an analytical approach
- The Lipid Droplet Knowledge Portal: A resource for systematic analyses of lipid droplet biology
- Computational modeling of cell signaling and mutations in pancreatic cancer
- Distinguishing between models of mammalian gene expression: telegraph-like models versus mechanistic models
- The Innate Immune Response to Invasive Pulmonary Aspergillosis: A Systems Modeling Approach
- Seasonal variation in SARS-CoV-2 transmission in temperate climates
- Modelling the impact of fexinidazole use on human African trypanosomiasis (HAT) transmission in the Democratic Republic of the Congo
- The impact of co-circulating pathogens on SARS-CoV-2/COVID-19 surveillance. How concurrent epidemics may decrease true SARS-CoV-2 percent positivity.
- Increased risk of death in covid-19 hospital admissions during the second wave as compared to the first epidemic wave. A prospective dynamic cohort study in South London, UK.
- Vaccination history for diphtheria and tetanus is associated with less severe COVID-19
- SARS-CoV-2 in wastewater from Mexico City used for irrigation in the Mezquital Valley: quantification and modelling of geographic dispersion
- Parental inflammatory bowel disease and autism in the offspring: Triangulating the evidence using four complementary study designs.
- Using real-time data to guide decision-making during an influenza pandemic: a modelling analysis
- Spatial Accessibility Modeling of Vaccine Deserts as Barriers to Controlling SARS-CoV-2 Transmission
- Adaptive vaccination may be needed to extirpate COVID-19: Results from a runtime-alterable strain-drift and waning-immunity model
- Citywide serosurveillance of the initial SARS-CoV-2 outbreak in San Francisco using electronic health records
- Effect of specific non-pharmaceutical intervention policies on SARS-CoV-2 transmission in the counties of the United States
- Maps and metrics of insecticide-treated net access, use, and nets-per-capita in Africa from 2000-2020
- Hybrid AI-assistive diagnostic model permits rapid TBS classification of cervical liquid-based thin-layer cell smears
- Automated scoring of pre-REM sleep in mice with deep learning
- Bridging scales: From cell biology to physiology using in situ single-cell technologies
- Which image-based phenotypes are most promising for using AI to understand cellular functions and why?
- Network analysis of Arabidopsis mitochondrial dynamics reveals a resolved tradeoff between physical distribution and social connectivity
- Classification of triple-negative breast cancers through a Boolean network model of the epithelial-mesenchymal transition
- Core liver homeostatic co-expression networks are preserved but respond to perturbations in an organism- and disease-specific manner
- Role of vascular smooth muscle cell phenotypic switching in plaque progression: A hybrid modeling study
- In silico investigations of intratumoral heterogeneous interstitial fluid pressure
- Dynamical Robustness and Its Structural Dependence in Biological Networks
- The impact of codon choice on translation process in Saccharomyces cerevisiae: folding class, protein function and secondary structure.
- Nothing better to do? Environment quality and the evolution of cooperation by partner choice
- To Sobol or not to Sobol? The effects of sampling schemes in systems biology applications
- Model reduction for initial value ODEs
- Cell orientation under stretch: Stability of a linear viscoelastic model
- COVID-19 optimal vaccination policies: A modeling study on efficacy, natural and vaccine-induced immunity responses
- Optimal allocation of limited vaccine to control an infectious disease: Simple analytical conditions
- Efficient representations of tumor diversity with paired DNA-RNA aberrations
- netgsa: Fast computation and interactive visualization for topology-based pathway enrichment analysis
- Inclusion of maintenance energy improves the intracellular flux predictions of CHO
- Stochastic optimal feedforward-feedback control determines timing and variability of arm movements with or without vision
- A physicochemical model of odor sampling
- Isolating Patterns in Open Reaction–Diffusion Systems
- Modeling Intracellular Delay in Within-Host HIV Dynamics Under Conditioning of Drugs of Abuse
- Compartmental Model Suggests Importance of Innate Immune Response to COVID-19 Infection in Rhesus Macaques
- Mechanical Models of Pattern and Form in Biological Tissues: The Role of Stress–Strain Constitutive Equations
- A Low-Dimensional Network Model for an SIS Epidemic: Analysis of the Super Compact Pairwise Model
- How mathematical modeling could contribute to the quantification of metastatic tumor burden under therapy: insights in immunotherapeutic treatment of non-small cell lung cancer
- Modelling the association between COVID-19 transmissibility and D614G substitution in SARS-CoV-2 spike protein: using the surveillance data in California as an example
- Correction to: Statistical field theory of the transmission of nerve impulses
- A mathematical model of circadian rhythms and dopamine
- Reconstructing the household transmission of influenza in the suburbs of Tokyo based on clinical cases
- N6-Methyladenosine RNA Methylation Regulator-Related Alternative Splicing (AS) Gene Signature Predicts Non–Small Cell Lung Cancer Prognosis
- Structural Design and Analysis of the RHOA-ARHGEF1 Binding Mode: Challenges and Applications for Protein-Protein Interface Prediction
- Reconciling Simulations and Experiments With BICePs: A Review
- An Integrated Computational and Experimental Approach to Identifying Inhibitors for SARS-CoV-2 3CL Protease
- Ranking-Based Convolutional Neural Network Models for Peptide-MHC Class I Binding Prediction
- Stationary distributions via decomposition of stochastic reaction networks
- Scheduling fixed length quarantines to minimize the total number of fatalities during an epidemic
- Correction to: Matrix group structure and Markov invariants in the strand symmetric phylogenetic substitution model
- Long time behavior and stable patterns in high-dimensional polarity models of asymmetric cell division
- Modeling the voltage distribution in a non-locally but globally electroneutral confined electrolyte medium: applications for nanophysiology
Twitter Bio Models
We are looking for a Post Doc/RA to work on flu spatial spread, interaction between flu sub-types, interaction between flu and other respiratory infections (e.g. COVID-19). More details here https://chiara-poletto.github.io/open-position.html @inserm @MedecineSU #epitwitter #mathbio @ESAdisease @eeid2021
"Super Founders" author and @DCVC Partner ($2B Deep Tech VC) in computational health/bio @alitamaseb discusses his success story in @SlonePartners' latest installment of their Diversity Interview Series. #comphealth #compbio #diversity
Read more here: https://www.slonepartners.com/diversity-interview-series-ali-tamaseb-partner-dcvc-author-super-founders-book/
.@alitamaseb, @DCVC Partner ($2B Deep Tech VC) in computational health/bio and cybersecurity, #author of "Super Founders" sat down for an interview with @SlonePartners for their Diversity Interview Series. #compbio #comphealth #diversity
Learn more here: https://www.slonepartners.com/diversity-interview-series-ali-tamaseb-partner-dcvc-author-super-founders-book/
For their Diversity Interview Series, @SlonePartners interviewed @alitamaseb, a @DCVC Partner ($2B Deep Tech VC) in computational health/bio and author of "Super Founders". #comphealth #compbio #diveristy #lifesciences #author
Learn about his story here: https://www.slonepartners.com/diversity-interview-series-ali-tamaseb-partner-dcvc-author-super-founders-book/
The Music of Life: Biology Beyond Genes by Denis Noble | audiobook | unofficial reading | part 2
#systemsbiology #systemsthinking #molecularbiology
https://www.youtube.com/watch?v=-ggvbbF3oWU
The Music of Life: Biology Beyond Genes by Denis Noble | audiobook | unofficial reading | part 1
#systemsthinking #systemsbiology #molecularbiology #genomics
https://www.youtube.com/watch?v=-HQknQTeKyE
Uma introdução aos métodos matemáticos nas ciências da vida| algumas palavras iniciais | aula 0
#udemycourses #udemycoupon #udemy #bioinformatics #biomathematics #bioinformática #biomatemática #bioinformatics #biomathematics #systemsbiology
https://www.youtube.com/watch?v=ltRH8Xcjioo
