Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
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- Enzyme-Constrained Metabolic Modeling Reveals CO2-Dependent Growth Control in Picochlorum celeri
- Mixing, competence, and commitment set the stability of cell identity
- Simulating the dynamics of gene regulatory systems at cellular scale
- Organelle Aging Predicts Human Disease
- Emergence and robustness of 3D complex tissue architectures from simple physical forces
- Uncovering disease progression trajectories across multiple timescales with hybrid ODE-mixture models
- The Global Phosphorylation Landscape of Acute Heat Stress in Reef-Building Corals
- Probing bacterial fitness in virtual chemostats
- A conserved pituitary response to tissue loss controls regeneration across vertebrates
- Quantum Barcoding Bridges High-Dimensional Immune Phenotyping with Signaling Responses across Species
- Target Trial Emulation of Metformin for Dementia Prevention in All of Us: Robustness to Cohort and Confounder Definitions
- Association between trajectories of breastfeeding duration and infant health: Prospective cohort study
- Maternal ADHD and exclusive breastfeeding: A prospective community-based cohort study
- Brownfield land and emergency hospital admissions in England: a small-area ecological study using contamination hazard score as an exposure proxy
- The role of climate and immunity in Brazil unprecedented outbreak of dengue in 2024
- Allostatic load as a potential pathway linking exposomic risk to early-onset cancer: a matched case-control study in the All of Us Research Program
- Canada's loss of measles elimination after 27 years: a mathematical modelling analysis of the five major provincial outbreak waves in 2025-2026
- Suicide in young people with Special Educational Needs and Disabilities (SEND) in England 2011 to 2022: A retrospective cohort study
- Spatially varying effect estimates of mediation in the presence of spatial auto-correlation
- Association of COVID-19 with neurodegenerative and neurological disorders in vaccinated and unvaccinated people
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- What is the future of genomic foundation models in biological research?
- CAR T cells from code to clinic: Framing modeling approaches with current translational research goals
- Sampling protein language models for functional protein design
- Let there be multifunctionality: Uncovering the dynamical zoo of the AC-DC genetic circuit
- High-throughput cell-free profiling of SARS-CoV-2 RBD variants enables rapid and quantitative in vitro affinity landscape mapping
- Defining and measuring proximity to criticality based on univariate time series
- Local growth laws determine global shape of molluscan shells
- Taylor’s law beyond finite moments: A route to dynamic financial risk
- Learning dissipative chaotic dynamics with boundedness guarantees
- Generalized Taylor’s law for infinite-mean heavy-tailed data under dependence and heterogeneity
- Cognitive agent neuron: Learning and decision-making inspired by dopaminergic neurons
- The role of the lymphatic micro-vasculature in malignant tissue fluid and drug transport
- Model topology determines parameter accessibility in Markov models of voltage-gated ion channels
- From individual-based models to macroscopic dynamics of antimicrobial resistance
- A dynamic mathematical model for sub-lethal damage recovery: integrating recovery processes into multi-target theory to visualize damage states
- A cancer-inspired metaheuristic for optimal control of breast cancer treatment
- Multistability and finite-time extinction in opinion-coupled competing epidemics
- Oscillatory regimes in a game-theoretic model for mosquito population dynamics under breeding site control
- Incorporating the field cancerization effect to improve modeling of untreated cancer growth
- Delayed risk perception and imitative behavior drive epidemic oscillations and multistability: A mathematical modeling study
- The promiscuity and degeneracy of ten unique RNA base-pairing rules can determine the success of adaptive RNA evolution
- Traction force microscopy using temporal information
- Direction-selective retinal ganglion cells encode motion direction uniformly, despite having discretely distributed cardinal preferences
- SpatioCAD: Context-aware graph diffusion model for pinpointing spatially variable genes in heterogeneous tissues
- Degeneracy in neuronal bifurcation landscapes: Equivalent bifurcation sequences across distinct parameter sets
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- Efficient computational frameworks for whole-cell models
- Spatiotemporal multiscale models reveal how cross-scale coordination shapes human health and longevity
- Can we trust genome-scale metabolic models?
- Next-generation metabolic models: From multi-constraint integration to AI-driven whole-cell kinetic simulation
- Unleashing the potential of whole-cell modelling one step at a time
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