Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- On the Convergence Rate Lower Bound of Biochemical Computational Modules
- Omnibenchmark: transparent, reproducible, extensible and standardized orchestration of solo and collaborative benchmarks
- Consciousness as Intrinsic Structure: Towards a Chemistry of Experience
- Task- and dataset-specific information in protein language models
- Microsecond-precision sound localization emerges from slow equilibrium dynamics
- RankByGene: Gene-Guided Histopathology Representation Learning Through Cross-Modal Ranking Consistency
- Beyond Local Power: Functional Connectivity Analysis for Subject-Independent Learning Style Recognition
- COLD-CI: A large-scale very high-resolution label polygon dataset for cocoa and non-cocoa classification in Cote d'Ivoire
- SVPLEX: A Nextflow Pipeline for Cohort-level Structural Variant Calling
- A multiscale theory based on metabolic scaling connects forest dynamics to tree-size distributions
- A dysregulated stromal remodelling programme characterises prior anti-TNF failure in ulcerative colitis
- Decoding the role of microbial interspecies interactions on nitrogen fixation
- Glucose repression of HXK1 is glucose flux-dependent via non-canonical regulation of Mig1
- Solving High-Dimensional Population Balance Equations via Dynamics-Preserving Autoencoders
- Cytokine interaction networks, not individual cytokines, drive anti-TNF response in Crohn's disease
- scROMA: batch-aware pathway-activity inference and a ground-truth simulation framework for single-cell transcriptomics
- Double Machine Learning with Multi-Gene Shared Backgroundfor Causal Inference in Single-Cell Data: Grouping Deviation Follows a Random Walk and the Accuracy-Compute Trade-Off
- Sample-specific protein-protein interaction networks inferred from transcriptomics and proteomics show high similarities
- Projection criteria and information risks forzero-dimensional biological dynamics across molecular,epidemic, and ecological systems
- Improved Metabolic Flux Estimations through Compositional Data Analysis
- Modelling the Effects of Smoking Behavior on Male-to-Male HPV Transmission and Anal Cancer Progression
- Prevalence and correlates of comorbid obstructive sleep apnea and restless legs syndrome in a population-based study from Benin, West Africa
- Relative fertility of HIV-positive women in the ART era: updated estimates from national household survey data
- Establishing wastewater-based SARS-CoV-2 variant surveillance independent of clinical isolates
- Incidence-weighted force of infection for predicting first reported health-zone cases during the 2026 Bundibugyo virus disease outbreak: a rolling-origin evaluation
- A clinical care intensity atlas of 505 diseases from 90 million people
- Mycoplasma genitalium infection and adverse pregnancy outcomes among pregnant women in South Africa: prospective cohort study
- ECHO: A lightweight tool for inferring missing case counts from pathogen phylogenies
- Deep learning with multiscale spatial context improves global dengue suitability mapping
- Population Differences in the Epidemiology, Phenotype, and Genetics of Hirschsprung Disease in the United States
- How to build an AI-driven digital organism
- A foundation model for acute abdomen diagnosis stratification and triage on noncontrast computed tomography
- Towards efficient perturbation for the noncoding genome
- CAKR: commutative algebra k-mer representations for genomics
- Antisense transcription reveals disease-associated adaptations in the human gut microbiome
- RIG-Ing the system to balance immune activation and inflammatory tissue damage in the airways
- Programmable regenerative tissues: Converging mammalian synthetic biology and tissue engineering
- The molecular landscape of cellular metal ion biology
- BulkFormer: A large-scale foundation model for bulk transcriptomes
- Quantitative cytokine profiling of primary human macrophages reveals distinct single-cell modes of trained immunity
- Many-eyes and sentinels in selfish and cooperative groups
- Hyperedge approximation for stochastic processes on higher-order networks
- Attention to heterogeneous information sources affects epidemic outcomes
- Reply to Szöllősi and Williams: The observation threshold mitigates the bias of transient genes on ancestral reconstruction
- Ancestral gene content estimates under gain–loss–duplication depend on the chosen observation threshold
- Infection-age structured transmission model highlights the efficacy of case-finding operations
- Energetic thresholds and hygienic cannibalism govern claustral ant colony founding under fungal challenge
- A comparison of alternative vaccination strategies for protecting those vulnerable to illness, hospitalization, or death upon infection with SARS-CoV-2
- Evolution of quantitative traits: Exploring the ecological, social and genetic bases of adaptive polymorphism
- Directed cell migration from protrusion-adhesion coupling under local chemotactic regulation
- Seasonal impacts on brucellosis transmission mediated by live sheep supply-demand dynamics
- Coupled information-epidemic dynamics with emotional thresholds and behavioral regression on multiplex networks
- Bistability analysis of a hybrid notch-delta signaling model in a single cell interacting with fixed external proteins
- Exploration of hepatitis B virus infection dynamics through physics-informed deep learning approach
- A practical introduction to ODE modelling in Stan for biological systems
- A benchmarking study of feature screening approaches across type 1 diabetes omics studies classification settings
- REvolutionH-tl 2.0: A fast and robust tool for decoding evolutionary gene histories
- Mechanical power output during stretch–shortening cycles of rat medial gastrocnemius muscle: Influence of various muscle length trajectories
- An agent-based model of Trypanosoma brucei social motility to explore determinants of colony pattern formation
- De novo assembly and authentication of ancient DNA metagenomes with nf-core/mag
- Correcting Structural Bias in Dynamical Models of Infectious Disease Using a Bayesian State-Space Framework
- Approaches for Assessing Parameter Identifiability in Mathematical Biology
- Coupled Information-Infection Dynamics Produce Information-Driven Shifts in Epidemic Regimes via Competing Vaccine Narratives
- Dynamics of Two Species with Density-Dependent Interactions and Application to Mutualism
- Mathematical Modeling of HDV RNA, HBV DNA, and HBsAg Dynamics During Lonafarnib-Based Therapy: Insights from the LOWR HDV-1 Study
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- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- Amniote gastrulation in silico
- A dialog between cell adhesion and topology at the core of morphogenesis
- Computational models of cellular bioenergetics indicate the role of Ca2+-regulated pyruvate dehydrogenase in metabolic remodeling
- The effect of treatment-induced resistance in a two-strain tuberculosis model with age structure and spatial diffusion
- Unattainable regions in the space of genetic relationships
- When reoxygenation fails: a dynamical model of HIF-1$$\alpha $$-mediated metabolic breakdown under hypoxia and SARS-CoV-2 infection
- Complex bifurcation dynamics of tumor–immune interactions incorporating combination therapies
- Site Frequency Spectrum in stationary branching populations