Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.

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- Fatty acid metabolic interactome atlas linked to cellular longevity
- An atlas of the human metabolome
- A conserved transcriptomic model defines metabolic resilience and vulnerability in obesity
- A Simulation of Semi-Infectious Particles and Genome Complementation Reproduces Interferon Response by Respiratory Epithelial Cells in vitro during Influenza A Virus Infection
- Bayesian Parameter Balancing Enables Robust and Consistent Estimation of Kinetic Parameter Uncertainty
- A quantitative framework for bacterial competition during starvation
- TORC1 integrates metabolic state transitions during aging
- Computational screen of promoter configurations that robustly sense transcription factor dynamics
- From time-course expression to gene regulation: direct linear ODE inference without finite-difference approximation
- Liver-to-Atria Inflammatory Axis Driving Arrhythmia

- Geographical Variation in Antimalarial Drug Resistance Marker Prevalence Across the Southern African Elimination Eight Region
- Bayesian Spatio-Temporal Modeling and Hotspot Mapping of Malaria Risk in Ghana
- Assessing the Impact of Interventions on Tuberculosis Control: India Based Modelling Framework
- Determinants, Barriers, and Completion Patterns of Routine Childhood Immunization in Bayelsa State, Nigeria
- Winter forecasting of respiratory viruses in Victoria Australia
- The control gap in long COVID research: a meta-epidemiological analysis
- Joint Associations of Outdoor Nitrogen Dioxide and Temperature with Incident Adult-Onset Asthma in the United States
- The Burden and Genomic Characterization of Shigella-Associated Diarrhea in Children Under Five in Lusaka, Zambia: A Prospective Cohort Study
- Smoking drives an epigenetic memory of aberrant hematopoiesis
- Personal Care Products and Incident Hypertension: Prospective Cohort Study of U.S. Women

- N-Orbit: towards a universal model and metric for comparing tissue microenvironments
- Pan-cancer analysis of single-cell profiles with polygenic signals reveals genetic influences on tumor immunity across cancers
- Deep neural operator for free boundary problems
- Interpretable deep learning framework for mapping E3–substrate binding interfaces
- Endometriosis-related alterations in the endometrium revealed by integrated single-cell and AI-powered approaches

- Tuning beta cells to the right frequency
- How is agentic AI changing how we do science?
- The metabolome of an E. coli CRISPRi library identifies benefits of minimal metabolite levels and targets for engineering
- Recurrent neural chemical reaction networks that approximate arbitrary dynamics
- TarDis: Achieving robust and structured disentanglement of multiple covariates

- Detecting changepoints in dynamical systems: Modeling time-varying transmission of seasonal influenza
- Data-driven particle dynamics: Structure-preserving coarse-graining for emergent behavior in nonequilibrium systems
- Reconstructing ancient genomes from gene counts: A robust likelihood framework with sampling bias correction
- Stable flapping flight in morphological space: Model, simulation, and explicit stability criteria
- Novel Knotted Solenoid fold with order-shifted coil arrangement leads to nontrivial 31 topology

- The scaling of swimming speed
- A theoretical model for the influence of age, race and ethnicity on retinal mitochondria dysfunction
- Mathematical model of tumor-macrophage interactions: Elucidating the tumor-driven macrophage phenotype reprogramming
- Optimisation of pembrolizumab therapy for de novo metastatic MSI-H/dMMR colorectal cancer using data-driven delay integro-differential equations
- Modelling the role of phages in biofilm ecosystems and the spread of antimicrobial resistance

- The dynamics of hepatitis B transmission with treatment and vaccination: A case study in the Ili region of Xinjiang, China, by a physics-informed neural networks approach
- Model-supported patient stratification using multi-objective synergy optimization in combination therapy
- Plant tolerance is explained by resource-based plant–nematode interactions
- Erratum to “How Mathematical Forms of Chemotherapy and Radiotherapy Bias Model-Optimized Predictions: Implications for Model Selection” [Mathematical Biosciences, volume 396 (2026) 109685]
- Mathematical modeling of neural stem cell migration within brain using multi-fiber tractography

- MIRAGE: Robust multi-modal architectures translate fMRI-to-image models from vision to mental imagery
- A simple model captures key characteristics of biological non-deterministic genotype-phenotype maps
- Spatial richness of neural magnetic fields
- Scaffold-Lab: Critical evaluation and ranking of protein backbone generation methods in a unified framework
- Integrated computational and experimental analysis explores FOLH1 expression patterns across cancers and nominates melatonin as a potential modulator in prostate cancer models

- In Vitro Analysis and Dynamic Modeling of SARS-CoV-2 Infection Inhibition by Sigma-1 Receptor Antagonist PB28
- Modeling the effects of vector species composition and temperature on the risk of dengue virus
- Characterization of the Killing-Rate for a Pest Control Model: The Cumulative Lethal Rate Based on Pesticide Dose-Response Relation
- Ensemble Optimal Control for Managing Drug Resistance in Cancer Therapies
- The Phylogenetic Structure of $$\beta $$-diversity: Covariance Matrix Sparsification of Critical Beta-splitting Trees

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- Primer: Drug discovery and patient-derived organoids
- Systems biology at the body scale: Toward adaptive digital twins in precision medicine
- Disruption of calcium homeostasis by β-amyloids: Insights from dynamical models
- Bifurcation theory and gene regulatory networks: A framework for understanding cell fate decisions in retinal regeneration
- Complex versus complicated systems biology, universality versus detailed modeling

- Sustained oscillatory mosquito population suppression analysis based on a hybrid switching dynamical system model
- Threshold dynamics for a stage-structured model with non-local impulsive birth in a heterogeneous environment
- Consistent multiscale modelling of movement and habitat selection
- Dynamic analysis of an HIV stochastic time-delay differential equations incorporating two infection pathways and CTL immune response
- Numerical Analysis of BIMs for Stochastic SIR and SIS Models with Variable Contact Diffusion Rates