Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- DyssomniaNN: Multi-Scale Spiking Neural Modeling of Human Sleep Disorders and Perceived Restedness
- PhySeqNet: physics-informed fluorescent foci detection for BARseq spatial transcriptomics
- Designing Protein Structures from Natural Language
- Organisms Write Their Own Evolution: Direct Epigenomic Inheritance Accelerates Learning on Compositional Tasks
- TopoLIA: Topology-Inspired Latent Interaction Attention for Drug Discovery
- Parameter Identifiability beyond the Fisher Information Approximation in Data-Driven Modeling
- Decoding Alignment without Encoding Alignment: A critique of similarity analysis in neuroscience
- RetroTAC: Learning Route-Derived Synthetic Accessibility for PROTACs
- Artificial Intelligence-Assisted Systems Biology Reconstruction of Diabetic Bone Marrow Dysfunction
- EEG Entrainment to Non-Speech Rhythmic Patterns Associated with Dimensions of Language Performance
- The Human Gut Cell Atlas v1.0: A Unified, Community-BuiltReference of Cellular Diversity Across the Gut
- Decision-relevant measurement for precision microbiome interventions
- A Multilayer Human Skin Diseasome Links Molecular Architecture, Clinical Co-occurrence, and Drug-Reversal Signatures
- Archetype analysis of multiplexed antibody imaging reveals interpretable morphological programs in optical pooled screens
- Higher-Order Organization Links Circulating Metabolites to Glucocorticoid Action in Human Adipose Tissue
- Multi-domain analysis of the fecal microbiome of dairy heifers, beef heifers, bred beef heifers, and adult beef cows in the central United States using paired 16S rRNA and 18S rRNA metabarcoding
- Pharmacological Effects and Candidate Bioactive Constituents of Huanglian Wendan Decoction in Experimental Metabolic Syndrome: Multi-Omics Analysis of Gut-Liver Metabolism and NLRP3 Signaling
- Measurement-Induced Decision Loss: A feasible-set theory of microbiome intervention under observation loss
- Unified Network Spectroscopy: Inferring Reduced Biological Dynamics from Fluctuations under Structured Noise and Broken Ergodicity
- Proteomes reflect size-based growth constraints across diverse microbes
- Mortality among Brazilian male police officers and firefighters over three decades
- Carbonaceous Components Underlying Wildfire Smoke PM2.5-Associated Alzheimer's Disease and Related Dementias in Older US Adults
- Quantifying Systematic Bias in Observational Causal Estimates Using Negative Controls: The Bias Attribution Fraction
- MID-LIFE LEISURE-TIME PHYSICAL ACTIVITY IS ASSOCIATED WITH LOWER HIP FRACTURE RISK IN UK BIOBANK
- Impact of Prolonged Obesity Across the Lifecourse on Myocardial Stress and Injury in Older Age: Birth Cohort Study
- Longitudinal personal environmental exposure and Streptococcus pneumoniae colonisation in a cohort of children 5-14 years old in rural Gambia.
- Integrating Longitudinal Cohorts for Population Health Research: Mainland and Island-based Puerto Rican Diabetes Study
- A Novel Digital Phenotype of Physical Activity: Associations with Heart Rate Fragmentation
- Life-course patterns of heavy menstrual bleeding and menstrual pain across multiple population-based cohorts
- Seasonally Normalized Vitamin D Status and Long-Term Mortality and Multisystem Disease Risk in the UK Biobank
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- Mapping the combinatorial coding between olfactory receptors and perception with deep learning
- Multiobjective learning and design of bacteriophage specificity
- Synthetic tissue ecology: Ecological control of developmental self-organization across scales
- A diversified consortium of engineered biosensors enables multi-target quantification
- Interpretable biophysical neural networks of transcriptional activation domains separate roles of protein abundance and coactivator binding
- Generalized Taylor’s law for infinite-mean heavy-tailed data under dependence and heterogeneity
- Mathematical discovery and exploration can be done at scale
- Mantis: A foundation model for mechanistic disease forecasting
- Large-scale semidefinite programming with graphics processing units
- Network topology creates independent control of multiple checkpoints in the cell cycle system
- Impact of air pollutants and meteorological factors on the transmission rate of scarlet fever in China
- Echoes before collapse: Deep learning detection of flickering in complex systems
- Utility-driven cooperation and emergent group diversity in the N-player Stag Hunt game: A framework relevant to collective biological behavior
- From neural propagation to conscious experience: A geometro-diffusion theory of consciousness
- Stochastic dynamics of an epidemic-behavior model
- Harvesting-driven dynamics in a modified Holling-Tanner model
- Regulating brucellosis network dynamics via clustering: Multistability, protective intervals and transient oscillations
- Examining the impact of forcing function inputs on structural identifiability
- Optimising malaria and dengue case management through optimal diagnostic test allocation under budget constraints
- Revisiting Fulvestrant Dosing: Biomarker-Driven Mathematical PK/PD Modeling and Dosing Optimization in Estrogen Receptor–Positive Breast Cancer
- Antimony 3: Extending human-readable model definitions for SBML Level 3 Core and Packages
- Understanding cell fate decisions with temporal attention
- Latent encoding of movement in primary visual cortex
- Identification of letters distorted by physiologically-inspired spatial scrambling
- Sparse neuronal C4 elevation induces network-wide transcriptomic and lipid-droplet remodeling in the cortical microenvironment
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- Next-generation metabolic models: From multi-constraint integration to AI-driven whole-cell kinetic simulation
- Unleashing the potential of whole-cell modelling one step at a time
- The evolution of standards in systems biology: From metabolic and multi-scale to whole-cell models
- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
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