Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Navigation driven by bidirectional information transmission between sensing and actuation
- Variational kinetics: elementary reaction kinetics via conic optimisation
- Divergence of detachment forces in the finite Voronoi model
- MIMIC-MJX: Neuromechanical Emulation of Animal Behavior
- From Derivatives to Exact Sequence Substitution Effects in Dynamic Programming for Biological Sequence Analysis
- Spatial proteomics guided by H&E-based AI reveals recurrence-risk niches in triple-negative breast cancer
- Omega-S: A Functional Resilience Index for LLM Fine-Tuning
- Stochastic partial differential equation model for environmental DNA dynamics in river environments
- Synergy and Complementarity: The Generative Basis of Chemical Organizations
- Expanding Protein Structure Prediction into Conformational State Space
- Mechanistic and machine learning models design human gut consortia that robustly inhibit Clostridioides difficile
- Deep learning of dynamic signatures resolves mechanistic ambiguity in complex signaling networks
- On the Robustness of Biomolecular Systems to Perturbations in Translational Resources
- A benchmarking framework for single-cell genome-scale metabolic model construction
- Sepsis Subtypes in Blood and Liver Define Precision Strategy for CXCR2 Blockade
- Quantitative Modeling of TLR Signaling Reveals Missing Negative Feedback Guiding Identification of TANK-IKKε Checkpoint
- Scaling of Noise Under Resource Constraints in Gene Regulatory Motifs
- Observation-masked neural posterior estimation for heterogeneous epidemiological surveillance data
- Epithelial regulatory networks link non-coding genetic variation to clinical heterogeneity in ulcerative colitis
- Genome-scale prediction of context-specific synthetic lethality beyond protein interaction networks
- Strain coexistence and competition for pathogens with asymmetric cross-immunity and waning immunity
- Health impacts of national and local air pollution control policies targeting electric generating units, mobile sources, and port activities in three US cities
- Partner loss and suicide among older adults: A nationwide cohort study from Austria
- The impact of expanded adolescent vaccination against COVID-19 depends on the epidemic status: a mathematical modelling study
- Suicide among older adults in Austria
- Bacteriological Profile and Antimicrobial Susceptibility Patterns of Uropathogens: A Retrospective Study from a Tertiary Care Hospital
- Spatiotemporal modelling of meteorological drivers and outbreak detection of Legionnaires disease in England
- Scrub typhus in northern Thailand: a seroprevalence study among Thai and highland populations
- Effect of five years of biannual azithromycin mass drug administration on enteric fever seroincidence in Niger: A randomized control trial
- Prevalence of Dengue and Chikungunya in the Horn of Africa: A Systematic Review and Meta-analysis
- GHT-SELEX demonstrates unexpectedly high intrinsic sequence specificity and complex DNA binding of many human transcription factors
- Density dependence and evolvability limit adaptive therapy in non-small cell lung cancer mouse model
- Deep-learning-enabled multi-omics analyses for prediction of future metastasis in cancer
- Spatiotemporal transcriptomics of human cardiovascular progenitors in pig hearts identifies Midkine as a positive regulator of neovascularization
- Inference of secreted protein signaling activities in intercellular communication
- RIG-Ing the system to balance immune activation and inflammatory tissue damage in the airways
- Programmable regenerative tissues: Converging mammalian synthetic biology and tissue engineering
- The molecular landscape of cellular metal ion biology
- BulkFormer: A large-scale foundation model for bulk transcriptomes
- Quantitative cytokine profiling of primary human macrophages reveals distinct single-cell modes of trained immunity
- Reply to Szöllősi and Williams: The observation threshold mitigates the bias of transient genes on ancestral reconstruction
- Ancestral gene content estimates under gain–loss–duplication depend on the chosen observation threshold
- Measurement accuracy in mechanobiology: A unifying statistical framework for testing cellular forces
- Hazard curvature makes within-host variability costly for survival
- Correction for Patel, The simplicity of the Hodge bundle
- Energetic thresholds and hygienic cannibalism govern claustral ant colony founding under fungal challenge
- A comparison of alternative vaccination strategies for protecting those vulnerable to illness, hospitalization, or death upon infection with SARS-CoV-2
- Evolution of quantitative traits: Exploring the ecological, social and genetic bases of adaptive polymorphism
- Directed cell migration from protrusion-adhesion coupling under local chemotactic regulation
- Integrated tick management strategies in fragmented peridomestic environments
- Seasonal impacts on brucellosis transmission mediated by live sheep supply-demand dynamics
- Modeling melanoma-immune interactions with a physiological delay incorporating dendritic cell vaccines and anti-PD-1 therapy
- Stability of linear delay differential systems via Laplace transformation
- Simulating reentrant mechanisms under structural remodeling: A computational model based on complex-order operators
- Worker allocation between defence and non-defence tasks in social insect colonies: Thresholds and stable configurations
- GeneInsight: Condensing gene set knowledge via language models
- AddaGCN: Spatial transcriptomics deconvolution using graph convolutional networks with adversarial discriminative domain adaptation
- Motif-cluster: Motif driven prioritization of transcription factor binding clusters
- A fast numerical integration scheme for clonal expansion processes on graphs
- Quantifying the impact of vaccination on pertussis dynamics in Sweden
- Fisher Information Limits on Genetic Stability, Diversity, and Regulation
- Polyploidy Arithmetic
- Noise-Driven Tipping in a Tumor-Immune Model with Optimal Combination Therapy
- When Strain Meets Stress: Threshold Dynamics and Regime Shifts in Wolbachia-Based Mosquito Population Replacement
- Assessing the Role of Model Complexity in Virtual Clinical Trial Outcomes
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- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- A dialog between cell adhesion and topology at the core of morphogenesis
- Computational models of cellular bioenergetics indicate the role of Ca2+-regulated pyruvate dehydrogenase in metabolic remodeling
- Dynamics of cell fate patterning in discrete multicellular systems
- Multiscale modelling of birth–death processes
- Ideal free distribution in a system of multiple predator and prey species
- Dynamics of pairwise-based SIS epidemic models on clustered networks with higher-order interactions
- An HIV–TB co-infection model: analysis and data-driven insights for China
- Entrance saturation as a control point for recruitment robustness in social insect colonies