Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
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- Novel Oral LNAD+ Increases Intracellular NAD and Metabolic Flux Without Elevating Circulating NAD: Evidence from a Randomized Controlled Trial
- Combinatorial constraints predict that mitochondrial networks contain a large component
- Cost-saving, trading, and internalization of externality: three economic strategies underlying amino acid archetypes of human metabolic enzymes
- An Integrated Analysis of GLP-1R Agonist Mechanisms: Addressing Study Variations in Heterogeneous Cell Systems
- Glycan Reachability Analysis: A Bottleneck-Aware Frameworkfor Inferring Tissue-Specic Glycan Biosynthetic Potential fromTranscriptomics
- Pan-cancer proteogenomic interrogation of the Ubiquitin Proteasome System
- MINGL Quantifies Borders, Gradients, and Heterogeneity in Multicellular Tissue Organization
- A trajectory-coupled network bottleneck governs gemcitabine resistance in 3D PDAC tissue models
- Barcoding biology: Chemotype predicts variation in genotype, physiology, and stress response
- Agent-Based Modeling of Idiopathic Lung Fibrosis and Mechanistic Treatments
- Population-Level Distribution of PRISQ Scores among adults accessing primary care services in the state of Qatar
- Birth order and disease risk across the human phenome: evidence from 10 million siblings
- Attributing heatwave mortality to human-induced climate change in Greece: a case-crossover and attribution analysis for 2000-2019
- Monoclonal antibody dispensing during and around pregnancy: a descriptive analysis using electronic health records in Italy
- Effectiveness of single-dose use of oral cholera vaccine towards reducing cholera incidence and severity during the 2022-2023 in Malawi; A cross-sectional study
- Comparison of United Kingdom (UK) and United States (U.S.) hypertension treatment status, physical activity and prospective mortality risk
- Tailoring physical activity recommendations to reduce cardiovascular mortality: interactions with age, sex and body morphology
- Factors Associated with Outcomes of Inpatient Severe Malaria Cases in the Ashanti Region, Ghana: An Analytic Cross-sectional Study using Routine Surveillance Data, 2018 to 2022.
- Differing Determinants of Overweight-Obesity and Glucose Intolerance in Offspring Born to Mothers with Diabetes During Pregnancy: Evidence from India
- IVF success rates in men with different causes of infertility: real world evidence from a population registry
- Neoantigen evolution and response to checkpoint inhibitor immunotherapy in colorectal cancer
- Machine learning-predicted chromatin organization landscape across pediatric tumors
- 3d-OT: a deep geometry-aware framework for heterogeneous slices alignment of spatial multi-omics
- Scaling and quantization of large-scale foundation model enables resource-efficient predictions in network biology
- SMART: spatial multi-omic aggregation using graph neural networks and metric learning
- Antithetic integral feedback control redesigned for improved dynamics and lower noise
- Haplotype-resolved reconstruction and functional interrogation of cancer karyotypes
- Fast, long-range intercellular signal propagation through growth-assisted positive feedback
- Competition and compromise between exogenous probiotics and native microbiota
- Dynamics of genetic circuits in Pseudomonas protegens
- Dynamical modeling of individual sensory reactivity and habituation learning
- Physics-constrained neural ordinary differential equation models to discover and predict microbial community dynamics
- VIBES: A multiscale modeling approach integrating within-host and between-hosts dynamics in epidemics
- Global stability of ecological and evolutionary dynamics via equivalence
- On the optimal integration of intelligent agents into network systems to steer cooperation
- Stochastic eco-evolutionary dynamics of multivariate traits: A framework for modeling population processes illustrated by the study of drifting -matrices
- Effects of insecticides and awareness on the dynamics of a delayed malaria model: A real-data calibration
- A computational study of adiposity-associated factors in the inflammatory process of osteoarthritis
- Global metabolic coherence as a derived property of microbial communities: A discrete hodge framework
- Optimal control of Alzheimer’s disease model via multi-target combination therapy
- Persistence for a class of nonautonomous systems of differential equations with unbounded delays
- How generalist predation shapes a predator-prey model: A bifurcation analysis
- Oncolytic viral therapy under type I interferon regulation: Mathematical modeling and analysis
- Stability analysis of a novel HIV model with CTL immune response, latency age, infection age and a saturated infection rate
- Genuine and spurious bistability in a simple epidemic model with waning immunity
- Extending differential gene expression testing to handle genome aneuploidy in cancer
- A modular architecture for trial-by-trial learning of redundant muscle activity patterns in novel sensorimotor tasks
- Role of fast-spiking interneurons in modulating across-trial variability and within-trial correlations in the striatum
- Emergent coexistence and the limits of reductionism in ecological communities
- An improved dataset for predicting mammal infecting viruses from genetic sequence information
- The Role of Viral Dynamics and Infectivity in Models of Oncolytic Virotherapy for Tumours with Different Motility
- Integrating Mechanistic Modeling and Machine Learning to Study CD4+/CD8+ CAR-T Cell Dynamics with Tumor Antigen Regulation
- Emergence of Bursting and Delay-Induced Spiral Patterns in Eco-Epidemiological Systems
- Modelling and Simulation of Collective Cell Migration with Non-Local Interactions on Time-Dependent Spatial Domains
- Final-Size Solutions for SIRI Models with Vaccination
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- Regulatory out-of-equilibrium processes in cells. Part I: Temporal heterogeneities and oscillations
- Regulatory out-of-equilibrium processes in cells. Part II: Spatial heterogeneities and condensates
- Simple systems, complex dynamics: lessons from minimal gene regulatory networks
- Toward a systems view of life’s origins: Modeling the emergence of complexity across chemical, informational and ecological levels
- Intercellular coupling and synchronization of circadian clocks: Theoretical insights and experimental perspectives
- Mathematical dissection of tumor phenotypic heterogeneity in a spatial data-informed nonlocal reaction-diffusion model
- Order-Dependent dissimilarity measures on phylogenetic trees
- Rate-induced tipping in a lake eutrophication model coupled with human activities
- Derivations of animal movement models with accumulated memory
- Extending a 1D Multi-Scale Plant Growth Model to Include Branching under Environmental and Soil Nutrient Dynamics