Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- CHRep: Cross-modal Histology Representation and Post-hoc Calibration for Spatial Gene Expression Prediction
- Shaping nematic order in bacterial films with single-cell resolution patterning
- Reversible Deep Learning for 13C NMR in Chemoinformatics: On Structures and Spectra
- PanGuide3D: Cohort-Robust Pancreas Tumor Segmentation via Probabilistic Pancreas Conditioning and a Transformer Bottleneck
- Resonance Complexity Theory and the Architecture of Consciousness: A Field-Theoretic Model of Resonant Interference and Emergent Awareness
- BadGraph: A Backdoor Attack Against Latent Diffusion Model for Text-Guided Graph Generation
- From Physical Difference to Meaning: A Constructor-Theoretic Framework for Prebiotic Information in Casimir-Lifshitz-Coupled Protocell Clusters
- Directional Confusions Reveal Divergent Inductive Biases Through Rate-Distortion Geometry in Human and Machine Vision
- Hierarchical organization of critical brain dynamics
- Modulating Cross-Modal Convergence with Single-Stimulus, Intra-Modal Dispersion
- Growth costs of suboptimal protein allocation in nonlinear models of growing cells
- Quantification and statistical comparison of cell-state transition kinetics using a parametric failure-based model
- Dynamics of the end-of-life phase explained by the saturating removal model
- Asymmetric crosstalk between the BMP and TGFβ pathways resolves signaling ambiguity
- Evaluating splicing factor and kinase network crosstalk through global phosphoproteomics
- Water-mediated productivity dynamics in shifting coral reef communities
- Multimodal analysis of molecular remodeling in aging spleen identified global and cell type specific changes
- Cell-type-resolved Metabolic Flux Inference Reveals Stromal Metabolic Reprogramming Across Human Cardiomyopathies
- Conserved metabolic vulnerabilities across pathogenic coronaviruses nominate host-directed therapeutic targets
- SugarBase: mapping glycomolecule precursors in microbes
- The Immunoglobulin G Glycome: A Modifiable Biomarker and Functional Effector of Aging, Disease, and Mortality
- Narcolepsy is associated with cardiovascular burden
- Determinants of Skilled Birth Attendance in Nigeria: A Population-Based Analysis of the 2018 Demographic and Health Survey
- Diagnostic Delays Drive Transmission in Dense Cities: Modeling the Waiting-Window Effect and Its Mitigation
- Comparative fine-mapping of breast cancer susceptibility loci using summary statistics methods and multinomial regression
- Vaginal metabolome signatures of high-risk HPV infection trajectories in HIV-negative premenopausal women
- Modeling the impact of adherence to U.S. isolation and masking guidance on SARS-CoV-2 transmission in office workplaces in 2021-2022
- The evolving epidemiology of scrub typhus in Thailand (2003-2024): insights from latent process modelling of national surveillance data
- Do Amyloid Trajectories Reach a Physiologic Ceiling? Evidence from Iterative Approximation and Simulation
- Episia: An Open-Source Python Library for Epidemiological Surveillance, Modeling, and Biostatistics in Resource-Limited Settings
- Systematically decoding pathological morphologies and molecular profiles with unified multimodal embedding
- Author Correction: Optimized protein-water interactions and torsional refinements yield balanced atomistic protein force fields
- szKendall: spatial-structural-zero-aware dissimilarity measures for subtype discovery using single cell Hi-C data
- Discovery of candidate therapeutic targets with Geneformer
- In silico discovery of nanobody binders to a G-protein coupled receptor using AlphaFold-Multimer
- Engineering sensor-based antithetic integral controllers for enhanced dynamic performance and noise attenuation
- The impact of package selection and versioning on single-cell RNA-seq analysis
- NOT-gated chimeric antigen receptor circuits in T and NK cells
- Constructing a holistic map of cell fate decision by hyper solution landscape
- Systemic rhythmicity of host and bacterial bile acid amidates in the mouse
- A parallel algorithm for the computation of the Jones polynomial
- Sparse identification of nonlinear dynamics and Koopman operators with Shallow Recurrent Decoder Networks
- Fast automated adjoints for spectral PDE solvers
- Tracing the origin of tropical North Atlantic Sargassum blooms to West Africa
- A swarm intelligence approach to density function reconstruction from moments using entropy optimization
- Multiple adsorptions shape collective T-even phage lysis dynamics: Insights from an individual-based model
- How animal movement influences wildlife-vehicle collision risk: A mathematical framework for range-resident species
- A hybrid discrete-continuum modelling approach for the interactions of the immune system with oncolytic viral infections
- Vitamin C as a nitrosation inhibitor: A modelling study across dietary patterns and water quality
- Adaptive Dynamics models for the evolution of class-structured populations in stable systems
- Three-population connectivity scheme for inhibitory control from the locus coeruleus governing the development of power law wake bouts through early infancy
- Persistence for a class of nonautonomous systems of differential equations with unbounded delays
- Using interconnected viscoelastic elements to investigate forces and the role of cell properties during cell migration
- A minimization principle behind the diffusion bridge of diurnal fish migration
- How mathematical forms of chemotherapy and radiotherapy bias model-optimized predictions: Implications for model selection
- Phase-field modeling of border cell cluster migration in Drosophila
- Enhancing generalizability of model discovery across parameter space with multi-experiment equation learning for biological systems
- Sharing the spotlight: Uncovering common attentional dynamics across species
- DMAPLM: A multimodal pretrained framework for computational drug repositioning
- Spatio–temporal modelling of in vitro influenza A virus infection: The impact of defective interfering particles on the type I interferon response
- Statistical and Structural Bias in Birth-Death Models
- Stochastic Analysis of Taxis and Kinesis Properties of Colonial Protozoa
- A Mathematical Model for Smooth Muscle Cell Phenotype Switching In Atherosclerotic Plaque
- Macrophage Polarization Determines Inflammation Amplification and Resolution
- Vascular-Coupled Modeling of Treatment Resistance in Tyrosine Kinase Inhibitor Therapy: Parameter Estimation and Phase-Dependent Sensitivity Analysis
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- Primer: Drug discovery and patient-derived organoids
- Complex versus complicated systems biology, universality versus detailed modeling
- Simple systems, complex dynamics: Lessons from minimal gene regulatory networks
- Toward a systems view of life’s origins: Modeling the emergence of complexity across chemical, informational and ecological levels
- Intercellular coupling and synchronization of circadian clocks: Theoretical insights and experimental perspectives
- Spatiotemporal dynamics of HIV in the Brain: perspective of mathematical modeling for its control via antiretroviral therapy
- Spatio-temporal pattern formation under varying functional response parametrizations
- Effects of host migration and travel loss on strain competition in a two-patch SIR model
- Evolution of a trait distributed over a large fragmented population: propagation of chaos meets adaptive dynamics
- A predator-prey model with age-structured role reversal