Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
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- Receptor-structured modelling of EGFR-driven tumor initiation: from spatially resolved cell-based simulations to reduced population dynamics
- Intricate Dynamical Cross-Talk Between p53 Protein and Cell Cycle Regulators Governs Mammalian Cell Fate
- Reductive carboxylation via isocitrate dehydrogenase 1 supports cardiac metabolic adaptation during oncometabolic stress.
- Comparative Evaluation of DDA and DIA Based Proteomic Workflows in Beryllium Related Lung Disease
- Antifungal tolerance and resistance dynamics depend on infection load, drug treatment, and host innate immunity
- Purinergic signaling disrupts emergent patterns of multicellular coordination in basal Xenobots.
- PRIME: scalable, robust inference of mechanistic cell states from multimodal single-cell counts via probability generating functions
- Untargeted cord blood metabolomics reveals altered lipid metabolism in neonates with gastroschisis
- Organizing principles in the Nitrogen-Carbon Landscape of Marine Heterotrophic Bacteria
- Cellular Complexity and Systemic Immune Profiles across Ancestral Diversity in Thailand and Mainland Southeast Asia
- Spatial Analysis and Multilevel Determinants of Hypertension in Zambia: Analysis of the 2017 WHO STEPS Survey
- Dengue and chikungunya virus transmission in Kinshasa, Democratic Republic of the Congo
- Early-life nutritional environment is associated with late-life cognition in the Health and Retirement Study, a pellagra epidemic natural experiment
- Sex-specific multimorbidity clusters and all-cause mortality in relatively healthy older adults: findings from the ASPREE cohort
- AI-Assisted Longitudinal Analyses of Environmental and Psychosocial Determinants of Subjective Cognitive Difficulties
- Burden of Cardiovascular Disease in Brazil, 1996-2023: A Retrospective Descriptive Study of the Epidemiology and Impact on Public Healthcare with Emphasis on Acute Myocardial Infarction
- Integration of lung tissue proteomics and genome-wide association data to identify lung cancer susceptibility proteins and potential drug targets
- Survival differences and artemisinin resistance in severe malaria among HIV coinfected patients: data from Mozambique
- The impact of changes in age-based eligibility criteria on seasonal influenza vaccine uptake in England between 2019 and 2024: A retrospective cohort study
- UKBAnalytica: an integrated R package for scalable phenotyping and reproducible epidemiological analysis within the UK Biobank Research Analysis Platform
- Modelling the role of the microbiome in antimicrobial resistance across scales
- Scalable, fast and accurate differential gene expression testing from millions of cells of multiple patients
- PhotIQA: A photoacoustic image data set with image quality ratings
- Modeling visual memorability assessment with autoencoders reveals characteristics of memorable images
- Leveraging longitudinal data to boost statistical power for gene–environment interaction analysis
- Phased variability in cell fate determination orchestrates antibody evolution
- Immune BioGraphy: A tale of graphical approaches in systems and virtual immunology
- Transcriptional competition biases the effects of second messengers in Escherichia coli
- Dango: Predicting higher-order genetic interactions
- Fusing imaging and metabolic modeling via multimodal deep learning in ovarian cancer
- Spatial and temporal prediction of Aedes aegypti populations with atmospheric and urban forms dependence
- Mathematical modeling of JAK2V617F clonal expansion in a general population cohort
- Correction for Zhang et al., Deep learning framework for quantifying self-organization in Myxococcus xanthus
- Quantum algorithms for viscosity solutions to nonlinear Hamilton–Jacobi equations based on an entropy penalization method
- Mean field game model of the impact of reductions in support on faculty research activity
- Collective dynamics and synchronization of coupled hair-bundle models with elastic and viscous interactions
- Varying parameter ranges alters both partial rank correlation coefficient results and phenomenological behavior when modeling the epithelial mesenchymal transition
- Adaptive social distancing under variant-specific transmission dynamics in a spatial SEIIR model with reinforcement learning
- Long-range interaction of multi-spiral cAMP waves in Dictyostelium discoideum amoeba aggregation
- A physiologically based mathematical model describing estradiol and progesterone actions on glucose-insulin dynamics throughout the menstrual cycle
- Simultaneous parameter and function discovery in differential equations using physics-informed neural networks
- Global dynamics of an intraguild predation predator–prey model with density-dependent velocity suppression
- Impacts of cooperative hunting and Allee effect on the dynamics of a three-species system with sexually reproducing top predators
- Optimal experiment design for practical parameter identifiability and model discrimination
- Modeling the impact of adiponectin on tumor-immune dynamics: Stability, bifurcations, and optimal control
- Cell-type resolved transcriptional network analysis of in vivo cellular senescence following injury
- Adhesion and polarity-driven morphogenesis: Mechanisms and constraints in tissue formation
- HoloBio: A holographic microscopy tool for quantitative biological analysis
- pyhgf: A neural network library for predictive coding
- CoDaLoMic: An R package for modeling microbiome compositional and longitudinal data
- Dynamical Behavior and Control Optimization of a Zoonotic Epidemic Model Incorporating Temperature Effects: Analysis and Simulations
- An Idealized Model of Extrusome Ejection Through the Collapse of a Capsule
- A New Insight into the Threshold and Oscillatory Regimes in Plant-Pathogen Models: A Nutrient-Driven Approach
- Modeling the Impact of Dynamic Gastric pH on Helicobacter pylori Eradication and Antibiotic Resistance Emergence
- A Modeling Approach to Stomatal Conductance under Different Vapor Pressure Conditions
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- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- A dialog between cell adhesion and topology at the core of morphogenesis
- Computational models of cellular bioenergetics indicate the role of Ca2+-regulated pyruvate dehydrogenase in metabolic remodeling
- Dynamics of cell fate patterning in discrete multicellular systems
- Primer: Drug discovery and patient-derived organoids
- Stoichiometric balance and sustained rhythms
- A generalised framework for building complex networks of evolution equations
- Effect of transcriptional delay on ribosome abundance control
- Spiking neural models for decision-making tasks with learning
- Modelling the effect of antibody depletion for dose-response behavior of common immunostaining protocols