Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- SimpleDesign: A Joint Model for Protein Sequence and Structure Codesign
- SurfSpec: Enhancing Off-Target-Agnostic Specificity by Bounding Pocket-Ligand Geometric Mismatch
- Large-Language Models as a Cognitive Virus
- Obstruction of Absolute Concentration Robustness by Conservation Laws in Non-Redundant Zero-One Networks
- Temporally constraining source imaging estimates in an underdetermined neural system with eigenmodes of cortical geometry
- Prospective Coding Improves Learning in Deep Continuous-Time Recurrent Networks
- Neuromodulation-inspired gated associative memory networks: extended memory retrieval and emergent multistability
- Structural control over equilibrium silicon and oxygen isotopic fractionation: A first-principles density-functional theory study
- The Identification of Biological Stains at Crime Scenes: A Promising Role for Proteomics and Machine Learning
- An Integrative Computational Approach to Predict Viral Epitopes by Targeting the MHC-TCR Complexation
- Systems genetics identifies ETS1 as a stress-dependent regulator of adipocyte insulin action and heme-iron homeostasis
- Predicting Cerebral Pericyte Contractility Across Experimental and Physiological Conditions: an in-silico framework
- INFORME: coupling information-theoretic experimental design with nonlinear mixed-effects modeling for efficient observation scheduling
- Sobetirome, a thyroid hormone receptor beta agonist, is a potential therapeutic agent for pulmonary fibrosis
- Single-cell informed metabolic modeling reveals organ-specific metabolic adaptations in breast cancer organotropism
- PhysiCelldFBA: Linking single-cell genome-scale metabolism to spatially explicit multicellular dynamics
- Mechanistic modeling of bacterial translation initiation across growth conditions
- Division-resolved inference of flow and trajectories in proliferating cell populations
- Systems-level proteomic reprogramming reveals mitochondrial restoration and inhibition of Rho GTPase-mediated cytoskeletal and inflammatory signaling in CKD
- Living multicellular systems induce decodable spatial patterns in bacterial collectives
- A target trial emulation study to estimate the causal effect of intravenous iron use during pregnancy and its effect on haematological and birth outcomes in Pakistan
- Hybrid risk scores integrating polygenic and clinical variables for endometriosis prediction
- A mechanistic statistical model of dengue dynamics in an endemic region
- Diversifying deaths: the shifting spectrum of childhood respiratory infectious mortality, 1990-2023: a systematic analysis of the Global Burden of Disease Study 2023
- No convergence in three decades: national trajectories of episode-fatality ratios for childhood lower respiratory infections in 204 countries, 1990-2023
- From Structural Resources to Latent Protective Capacity: A Bayesian Multilevel Analysis of Flood Exposure and Depressive Symptoms in Indonesia
- Multi-season evaluation and analysis of categorical trend forecasts of influenza hospital admissions in the United States
- Defining severe acute respiratory infection hospitalisations for national register-based surveillance in Finland, 2022-2025
- Warming, thermal variability, and the 96% decline in childhood respiratory-infection mortality in China: a national time-series analysis of the Global Burden of Disease Study 2021 and the C-LSAT high-resolution climate dataset
- The epidemiology of knee injuries in New Zealand, 2015-2024
- Assessment of the Japanese national examination for pharmacists using locally fine tuned large language models
- Microenvironment-aware transcriptome reconstruction in spatial transcriptomics
- What clinicians should know about how large language models reason
- UPMA: unspecified pretraining and modular adaptation for context-aware target delineation in adaptive esophageal radiotherapy
- MetaCAT enables reconstruction of high-quality microbial genomes and their association with host traits from metagenomic data
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- Correction for Zhang et al., Reconstructing the early spatial spread of pandemic respiratory viruses in the United States
- Uncovering dynamic human brain phase coherence networks
- Stochasticity and probabilistic trajectory scoring are essential for data-driven closures of chaotic systems
- Group size effects and collective misalignment in LLM multi-agent systems
- Many-eyes and sentinels in selfish and cooperative groups
- A stochastic agent-based model for naive CD8+ T cell recirculation dynamics in mice
- A revised ribosome–antibiotic model with proportional feedback synthesis explains recovery from translation inhibition
- Pandemic waves as the outcome of coupled social and disease dynamics: A mathematical modelling study
- A systems-based analysis of feedback structure and characteristic timescales in turnover-mediated mechanical adaptation
- From signal dynamics to cell fate: The role of learning duration
- Perspective: Allee effects in theory and reality
- Hybrid mechanistic-machine learning models in biosciences: Causality, forecasting, and lab-to-field translation
- Logistic gene regulatory networks: A modeling framework beyond Hill functions
- Permanent charge effects on current-voltage relations via classical Poisson-Nernst-Planck systems under relaxed electroneutrality boundary conditions
- Beyond : How vaccination and post-infection mortality drive epidemic persistence and oscillations
- PCIPG: A comprehensive framework for protein complex identification based on a probabilistic graphical model
- Robust circular cluster-based statistics for respiration-brain coupling
- Topological potentials guiding protein self-assembly
- Sequence-free landscape inference for directed evolution
- Balanced DNA interpolation improves learning of genetic distance-informed embeddings in plants
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- Next-generation metabolic models: Nonlinear resource allocation beyond the proteome
- Driving biological insight from genome-scale and multiscale to whole-cell modeling
- Amniote gastrulation in silico
- A dialog between cell adhesion and topology at the core of morphogenesis
- Computational models of cellular bioenergetics indicate the role of Ca2+-regulated pyruvate dehydrogenase in metabolic remodeling
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