Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Similarity-based matrix factorization for revealing interpretable dimensions in representational data
- Integrating Biological-Informed Recurrent Neural Networks for Glucose-Insulin Dynamics Modeling
- Synthesizable Molecular Generation via Soft-constrained GFlowNets with Rich Chemical Priors
- GRAFT: Gain-Recalibrated Adapters for Transformer-Based Neural Population Activity Modeling
- OncoTraj: a public benchmark for longitudinal resistance prediction in EGFR-mutant non-small-cell lung cancer on osimertinib
- A Comprehensive Inference-Time Augmentation Framework in Physiological Signals: Application to PPG-Based AF Detection
- Spontaneous polarization for protrusion-driven cell crawling
- Spatial Model Selection and Uncertainty Quantification: Comparing Continuous and Discrete Wound Healing Models
- From the microscope to High Performance Computing centers, a national effort toward automated data workflows for microscopy facility users in France
- Compositional proofreading through critical self-tuning
- Intricate Dynamical Cross-Talk Between p53 Protein and Cell Cycle Regulators Governs Mammalian Cell Fate
- Organizing principles in the Nitrogen-Carbon Landscape of Marine Heterotrophic Bacteria
- Comparative Evaluation of DDA and DIA Based Proteomic Workflows in Beryllium Related Lung Disease
- Antifungal tolerance and resistance dynamics depend on infection load, drug treatment, and host innate immunity
- Purinergic signaling disrupts emergent patterns of multicellular coordination in basal Xenobots.
- PRIME: scalable, robust inference of mechanistic cell states from multimodal single-cell counts via probability generating functions
- Untargeted cord blood metabolomics reveals altered lipid metabolism in neonates with gastroschisis
- Cellular Complexity and Systemic Immune Profiles across Ancestral Diversity in Thailand and Mainland Southeast Asia
- Clostridial acidogenesis product profiles are discontinuous: a thermodynamic hypothesis
- HIP-MS: An ultra-high-throughput, sensitive, and versatile affinity enrichment platform for static and dynamic interactome profiling
- Modeling the Impact of Pediatric RSV Immunization in Massachusetts, 2024--2025
- Burden of Chronic Kidney Disease in China, 1990-2021: Findings from the 2021 Global Burden of Disease Study
- Mortality in people with attention-deficit/hyperactivity disorder (ADHD): Examining how risk is embodied in a pooling of two prospective cohort studies
- Exploring emergency department attendance patterns during the UEFA European Football Championship 2024 in Germany
- Within-household transmission risk of pulmonary tuberculosis in the era of universal antiretroviral therapy
- Limitations of cross-border containment strategies for Bundibugyo ebolavirus
- A Decade of the Center for Disease Control and Prevention's FluSight Influenza Forecasting
- Clonal Hematopoiesis of Indeterminate Potential Refines Cardiovascular Risk Stratification in Cardiovascular-Kidney-Metabolic Syndrome Stages 0-3
- Physical activity, fatty acids, and MASLD risk: Behavioural and metabolic factors jointly shaping liver health in populations
- Integrated cardiometabolic and nutritional risk profiling identifies pregnancy loss as a marker of systemic metabolic vulnerability
- Robust footprinting with sample-specific Tn5 bias correction for bulk and single cell ATAC-seq
- Evaluating the role of pretraining dataset size and diversity on single-cell foundation model performance
- Scaling up training dataset size for transcriptomic AI models is much pain with little gain
- A scalable approach to investigating sequence-to-function predictions from personal genomes
- Gene dependency-informed inference of response to targeted cancer therapies
- Tuning beta cells to the right frequency
- How is agentic AI changing how we do science?
- The metabolome of an E. coli CRISPRi library identifies benefits of minimal metabolite levels and targets for engineering
- Recurrent neural chemical reaction networks that approximate arbitrary dynamics
- TarDis: Achieving robust and structured disentanglement of multiple covariates
- Mean field game model of the impact of reductions in support on faculty research activity
- Symmetry-breaking thermomagnetic dynamics of ferrofluid: Oscillation, spontaneous rotation, and flow bistability under laser irradiation
- What leads to administrative bloat? A dynamic model of administrative cost and waste
- Traveling waves in a continuum model of schooling swimmers
- Detecting changepoints in dynamical systems: Modeling time-varying transmission of seasonal influenza
- Modelling the impact of vaccination-dependent contact rates on disease transmission: Applications to COVID-19
- A voter-model representation of the multi-allelic Moran process: Exact stationary distributions and diversity thresholds from well-mixed populations to complex networks
- Managed-bee supplementation may drive parasite-mediated exclusion of wild bees
- A model of STAT1-p53 coordination: Regulating p21 and PUMA to program cell fate under stress
- The effect of mutualistic interactions on diversity patterns in island biogeography
- Generalized quasispecies model with time delays and periodic fluctuations in replication
- Spatial segregation and aggregation induced by memory and maturation delays in a diffusive predator-prey system
- Threshold analysis for a diffusive SIS epidemic model with infection-age
- Anthropogenic noise reshapes community stability by disrupting parental care-mediated trophic feedbacks
- Dynamics in an almost periodic metapopulation with competition and habitat destruction: An exponential dichotomy based approach
- Retraction: Two Birds with One Stone? Possible Dual-Targeting H1N1 Inhibitors from Traditional Chinese Medicine
- Retraction: Identification of Potent EGFR Inhibitors from TCM Database@Taiwan
- Evolution of phenocopying in a dynamical model of developmental trajectories
- Multi-stable oscillations in cortical networks with two classes of inhibition
- Statistics of cortical representational drift can enable robust readout
- Effects of Nutrient Input and Zooplankton Immunity to Phytoplankton-Derived Toxins on Shallow Take Algal Blooms and Dynamics
- Drivers of Variation in the Optimal Spatial Structure of Collective Information Gatherers
- Virulence Evolution in Host Populations with Heterogeneous Immune Responses: The Weakening of the Uncommon Weak
- Travelling Waves in Gene Expression: A Mathematical Model of Cell-State Dynamics in Melanoma
- MNRS: Multi-Factor Network-Based Ranking Score for Detecting Critical Transitions of Complex Diseases Using Gut Microbial Data
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- A dialog between cell adhesion and topology at the core of morphogenesis
- Computational models of cellular bioenergetics indicate the role of Ca2+-regulated pyruvate dehydrogenase in metabolic remodeling
- Dynamics of cell fate patterning in discrete multicellular systems
- Primer: Drug discovery and patient-derived organoids
- Systems biology at the body scale: Toward adaptive digital twins in precision medicine
- Modelling the effect of antibody depletion for dose-response behavior of common immunostaining protocols
- Transient tumor-induced disruption of peristaltic flow: a magnetohydrodynamic modeling framework
- A framework for jointly modeling the natural history of ductal carcinoma in situ and invasive breast cancer
- Stochastic modelling and statistical inference for the time to extinction of a class of populations with sexual reproduction
- A hybrid framework for compartmental models enabling simulation-based inference