Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- Structure-Informed Multiple Sequence Alignment: A Formal Model and Hardness Results
- Evolution of cooperation in the multiplex
- AgentPLM: Agentic Protein Language Models with Reasoning-Augmented Decoding for Protein Sequence Design
- A Foundation Model for Wearable Movement Data in Mental Health Research
- FOVI: A biologically-inspired foveated interface for deep vision models
- Identifying Therapeutic Targets for Triple-Negative Breast Cancer using a Novel Mathematical Model of the Tumor Microenvironment
- Measuring Understanding Through Discrete Compositional Knowledge Structures in Hierarchical Automata
- A 1000-hour EEG-EMG-audio dataset of Japanese speech production
- Hypergraphs from multivariate connectivity: caCoh-based EEG/MEG representation
- Annotation-Informed Block-Sparse Bayesian Modeling for cis-Expression Prediction
- Development positions malignant cellular states but does notexplain their diversification
- Extracellular vesicles from Manila clam (Ruditapes philippinarum): tailored isolation from hemolymph and insights into water-derived vesicles
- iSsus3744: A Genome-Scale Model-Guided Strategy for Rational Media Design for Cultivated Pork
- Growth-resolved genome-scale metabolic modeling of Priestia megaterium SR7 validated by chemostat and 13-C flux analysis
- Intestinal Dysbiosis in Necrotic Enteritis: Dissecting the Roles of Eimeria and Clostridium perfringens
- EndoTwin-W: glycodelin-A and CA-125 as non-invasive biomarkers of endometrial receptivity derived from a multiscale computational digital twin
- Analyzing the dynamics in defense/counter-defense games among hosts and pathogens
- Ultrasensitive response in bacterial replication initiation
- Modeling of Glucosinolate Biosynthesis During Biotic Stress as a Function of mRNA
- Explainable machine learning reveals an RBP regulatory logic of exon skipping
- Suspected rabies exposure among animal-bite human cases in Busia district, Uganda: Prevalence, associated factors and delayed post-exposure care-seeking. A cross-sectional study
- Integrated surveillance resolves Darien paradox of Oropouche virus emergence in Panama migration corridor
- 24-hour sleep-wake regularity and cognitive aging among 74,733 middle-aged and older adults from the US and Europe: The LifeSPAN Consortium
- Sleep Disorders Modify the Age-Related Trajectory of Circadian Rest-Activity Rhythms: Evidence from NHANES 2011--2012 Wrist Actigraphy
- Why epidemic risk at the 2026 World Cup may not be what you think
- High Incidence of Adverse Pregnancy Outcomes are Associated with Maternal Age and Infection Status in a Resource-Limited Community
- Associations between serum estradiol and estrone and Alzheimer's disease biomarkers: an analysis in female participants from the European Prevention of Alzheimer's Dementia Longitudinal Cohort Study (EPAD LCS)
- COVID-19 vaccine effectiveness in children under 5 in the USA: a test-negative case-control study
- Multidomain HMOD in Ghanaian Adults: Prevalence, Predictors, and Implications
- Subtype Dynamics Reveal Horizon-Dependent Structure in Influenza Predictability
- scMEDAL: interpretable single-cell transcriptomics analysis with batch effect visualization via deep mixed-effects autoencoder
- Conditional Monge Gap enables generalizable single-cell perturbation modelling
- Improving protein and protein interactions using pseudo-dimers derived from monomeric proteins
- Uncertainty-aware abstention in medical diagnosis based on medical texts
- Scoring gene importance by interpreting single-cell foundation models
- Tuning beta cells to the right frequency
- How is agentic AI changing how we do science?
- The metabolome of an E. coli CRISPRi library identifies benefits of minimal metabolite levels and targets for engineering
- Recurrent neural chemical reaction networks that approximate arbitrary dynamics
- TarDis: Achieving robust and structured disentanglement of multiple covariates
- Symmetry-breaking thermomagnetic dynamics of ferrofluid: Oscillation, spontaneous rotation, and flow bistability under laser irradiation
- What leads to administrative bloat? A dynamic model of administrative cost and waste
- Traveling waves in a continuum model of schooling swimmers
- Detecting changepoints in dynamical systems: Modeling time-varying transmission of seasonal influenza
- Data-driven particle dynamics: Structure-preserving coarse-graining for emergent behavior in nonequilibrium systems
- A model of STAT1-p53 coordination: Regulating p21 and PUMA to program cell fate under stress
- The effect of mutualistic interactions on diversity patterns in island biogeography
- The scaling of swimming speed
- A theoretical model for the influence of age, race and ethnicity on retinal mitochondria dysfunction
- Mathematical model of tumor-macrophage interactions: Elucidating the tumor-driven macrophage phenotype reprogramming
- Dynamics in an almost periodic metapopulation with competition and habitat destruction: An exponential dichotomy based approach
- Juvenile-adult asymmetry in species interactions and risk-taking behavior: mechanisms governing population stability
- Stoichiometric constraints and cooperative hunting reshape tri-trophic food-chain dynamics and trophic transfer efficiency
- Time evolution of infection state correlation of nodes in an SIR model on a random contact network
- Dynamical analysis of heterogeneous epidemic models with discrete and continuous contact variation
- Histology-informed spatial domain identification through multi-view graph convolutional networks
- A statistical framework for comparing epidemic forests
- The total eclipse of bioinformatics: From disruption to convention, and a gentle warning
- On real-time calibrated prediction for complex model-based decision support in pandemics: Part 2
- Challenges and progress in RNA velocity: Comparative analysis across multiple biological contexts
- Channel Transport: Gating, Geometry, and Heterogeneous Diffusion
- An Analytical Framework for Phenotypic Selection of Fitness-Conferring Genes
- Methods for Analyzing RNA Pseudoknots via Chord Diagrams and Intersection Graphs
- Correction: Revisiting Turing’s Chemical Basis of Morphogenesis
- In Vitro Analysis and Dynamic Modeling of SARS-CoV-2 Infection Inhibition by Sigma-1 Receptor Antagonist PB28
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- Primer: Drug discovery and patient-derived organoids
- Systems biology at the body scale: Toward adaptive digital twins in precision medicine
- Disruption of calcium homeostasis by β-amyloids: Insights from dynamical models
- Bifurcation theory and gene regulatory networks: A framework for understanding cell fate decisions in retinal regeneration
- Complex versus complicated systems biology, universality versus detailed modeling
- A hybrid framework for compartmental models enabling simulation-based inference
- Sustained oscillatory mosquito population suppression analysis based on a hybrid switching dynamical system model
- Threshold dynamics for a stage-structured model with non-local impulsive birth in a heterogeneous environment
- Consistent multiscale modelling of movement and habitat selection
- Dynamic analysis of an HIV stochastic time-delay differential equations incorporating two infection pathways and CTL immune response