Model Board
Each subheading shows the most recent computational models published in each journal or preprint server. As journals publish, this page is autonomously updated and clicking the links will send you to the article.
- High-dimensional dynamics in low-dimensional networks
- Dual-Laws Model for a theory of artificial consciousness
- drGT: Attention-Guided Gene Assessment of Drug Response Utilizing a Drug-Cell-Gene Heterogeneous Network
- Modeling Metabolic State Transitions in Obesity Using a Time-Varying Lambda-Omega Framework
- ELISA: An Interpretable Hybrid Generative AI Agent for Expression-Grounded Discovery in Single-Cell Genomics
- Evaluating Targeted Mobility Restrictions on COVID-19 Transmission in Seoul: A Metapopulation Modeling Study Using Mobile Phone Data
- Dual Mechanisms for Heterogeneous Responses of Inspiratory Neurons to Noradrenergic Modulation
- Training a force field for proteins and small molecules from scratch
- Age-dependent distribution of officially reported cases of vector-borne infections
- The immediate effect of kangaroo mother care on Mother-infant inter-brain synchrony and infant brain function
- Expanding TheCellMap.org to visualize a genome-scale genetic interaction network for a human cell line
- TRAILBLAZER: generative multicellular perturbation model of biology
- BoolDog: integrated Boolean and semi-quantitative network modelling in Python
- Multicomplex Integrative Structural Modeling of a Human Histone Deacetylase Interactome
- Informing agent-based models with spatial data using convolutional autoencoders
- Interactome mapping in human excitatory neurons reveals novel risk genes and pathways in Alzheimer's disease
- A stress-function tradeoff organizes epithelial heterogeneity across spatial scales in the human thyroid
- The Female Biomarker Challenge: Sex-Specific Network Robustness Constrains Biological Age Estimation and Geroscience Trial Design
- Alveolar-Basal Intermediates Drive Pulmonary Fibrosis via Coordination of a Pro-Fibrotic Signaling Niche in Silicosis
- 1100 Synthetic Benchmark Problems for Dynamic Modeling of Cellular Processes
- Depression and anxiety as causes and consequences of urinary incontinence in women: a population-based study
- Sustained High Prevalence of Multiple Antimalarial Drug Resistance Markers in Uganda in 2023-24
- TrialScout links published results to trial registrations using a large language model
- THE PREVALENCE AND FACTORS ASSOCIATED WITH INTIMATE PARTNER VIOLENCE AMONG PREGNANT WOMEN IN TANZANIA: A CROSS-SECTIONAL ANALYSIS OF THE 2022 TANZANIA DEMOGRAPHIC AND HEALTH SURVEY AND MALARIA INDICATOR SURVEY (2022-TDHS-MIS)
- Global comparison of influenza A and B epidemiology identifies consistent geographic and socio-demographic predictors
- One Health Longitudinal Study Protocol on Zoonotic and Vector-Borne Diseases in Battambang province, Cambodia: An Inter-Sectoral Approach
- Oral-Cardiovascular Links via Blood Biomarkers: An Exposure-Wide Analysis
- A job exposure matrix for occupational exposure to airborne micro and nanoplastics (PlastiXJEM(R)) and associations with respiratory outcomes
- A Machine Learning Framework for Constructing Heterogeneous Contact Networks: Implications for Epidemic Modelling
- Bias and Variance of Adjusting for Instruments
- Celcomen: spatial causal disentanglement for single-cell and tissue perturbation modeling
- Illuminating cell states by a comprehensive and interpretable single cell foundation model
- FineST: contrastive learning integrates histology and spatial transcriptomics for nuclei-resolved ligand-receptor analysis
- Author Correction: Generalizable and scalable protein stability prediction with rewired protein generative models
- EPInformer: scalable and integrative prediction of gene expression from promoter-enhancer sequences with multimodal epigenomic profiles
- Antithetic integral feedback control redesigned for improved dynamics and lower noise
- Haplotype-resolved reconstruction and functional interrogation of cancer karyotypes
- Fast, long-range intercellular signal propagation through growth-assisted positive feedback
- Competition and compromise between exogenous probiotics and native microbiota
- Dynamics of genetic circuits in Pseudomonas protegens
- On the optimal integration of intelligent agents into network systems to steer cooperation
- Stretch and flow at the gliovascular interface: High-fidelity modeling of astrocyte endfeet
- Mechanical compliance enhances the impulsive energy absorption of glassy polymer films
- Operator-level quantum acceleration of non-logconcave sampling
- Strategy evolution on temporal hypergraphs
- Global metabolic coherence as a derived property of microbial communities: A discrete hodge framework
- Optimal control of Alzheimer’s disease model via multi-target combination therapy
- The evolution of cooperation in the division of labor on generalized networks with a single output
- Tumor Mutational Burden Shapes Success and Resistance in Cancer Immunotherapy
- An extensive study of two-node McCulloch-pitts networks
- Persistence for a class of nonautonomous systems of differential equations with unbounded delays
- Combining model-based and data-driven models: An application to synthetic biology resource competition
- Dynamical analysis of a spatially heterogeneous disease model with degenerate structure
- The impact of migration-mediated multi-threshold control strategies on disease spread of a Filippov patch epidemic model
- Sensitivity and uncertainty analyses for model of olfaction using Dempster-Shafer theory and neural networks
- Learning, sleep replay and consolidation of contextual fear memories: A neural network model
- Assessing the impact of climate and control interventions on spatio-temporal malaria dynamics using a stochastic metapopulation model
- Separating random and deterministic sources of computational noise in explore-exploit decisions
- TUSCAN: Tumor segmentation and classification analysis in spatial transcriptomics
- Sub-national modelling of surveillance sensitivity to inform declaration of disease elimination: A retrospective validation against the elimination of wild poliovirus in Nigeria
- Vector Encoding of Phylogenetic Trees by Ordered Leaf Attachment
- Effects of Multi-Phase Control Mechanism on Fibroblast Dynamics: A Segmented Mathematical Modeling Approach
- Transient and Asymptotic Dynamics of a Bioeconomic Fishery Model with Market Price Fluctuation and Effort Capacity Constraints
- Characterising Epigenetic Tipping Points using a Spectral Dimension Reduction Approach
- Counting Spinal Phylogenetic Networks
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- Understanding the temperature response of biological systems: Part II - Network-level mechanisms and emergent dynamics
- Understanding the temperature response of biological systems: Part I - Phenomenological descriptions and microscopic models
- Primer: Drug discovery and patient-derived organoids: Primer: Innovative approaches for drug discovery
- Regime Shifts in Lakes: Observations, Models and Experiments
- Bridging Mechanism and Data: Hybrid Modeling Approaches for Cancer and Aging Research
- Derivations of animal movement models with accumulated memory
- Rate-induced tipping in a lake eutrophication model coupled with human activities
- Order-Dependent dissimilarity measures on phylogenetic trees
- Extending a 1D Multi-Scale Plant Growth Model to Include Branching under Environmental and Soil Nutrient Dynamics
- Evolutionarily stable strategy in advective patchy environments